[med-svn] [Git][med-team/nim-hts][master] 3 commits: Fix install location for example

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / nim-hts


Commits:
f9c733ac by Nilesh Patra at 2020-11-05T11:23:04+05:30
Fix install location for example

- - - - -
992c2c59 by Nilesh Patra at 2020-11-05T11:24:26+05:30
Regenerate files during build so there are no install problems if tests are not run

- - - - -
e40e33e4 by Nilesh Patra at 2020-11-05T11:26:07+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/nim-hts-examples.install
- debian/rules
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+nim-hts (0.3.12+ds-4) unstable; urgency=medium
+
+  * Remove wrong path while running tests
+  * Fix install location for example
+  * Regenerate files during build
+
+ -- Nilesh Patra <npatra974 at gmail.com>  Thu, 05 Nov 2020 11:25:28 +0530
+
 nim-hts (0.3.12+ds-3) unstable; urgency=medium
 
   * Add test dependency on build-essential


=====================================
debian/nim-hts-examples.install
=====================================
@@ -1,10 +1,10 @@
-tests/*.nim			usr/share/doc/hts-nim-examples
-tests/*.sam			usr/share/doc/hts-nim-examples
-tests/test_files		usr/share/doc/hts-nim-examples
-tests/*.vcf			usr/share/doc/hts-nim-examples
-tests/*.bcf*			usr/share/doc/hts-nim-examples
-tests/*.bam*			usr/share/doc/hts-nim-examples
-tests/*.fa*			usr/share/doc/hts-nim-examples
-debian/missing-sources/*	usr/share/doc/hts-nim-examples
-debian/tests/run-unit-test	usr/share/doc/hts-nim-examples
-debian/tests/*.nim		usr/share/doc/hts-nim-examples
+tests/*.nim			usr/share/doc/nim-hts-examples
+tests/*.sam			usr/share/doc/nim-hts-examples
+tests/test_files		usr/share/doc/nim-hts-examples
+tests/*.vcf			usr/share/doc/nim-hts-examples
+tests/*.bcf*			usr/share/doc/nim-hts-examples
+tests/*.bam*			usr/share/doc/nim-hts-examples
+tests/*.fa*			usr/share/doc/nim-hts-examples
+debian/missing-sources/*	usr/share/doc/nim-hts-examples
+debian/tests/run-unit-test	usr/share/doc/nim-hts-examples
+debian/tests/*.nim		usr/share/doc/nim-hts-examples


=====================================
debian/rules
=====================================
@@ -5,8 +5,8 @@ DEB_BUILD_OPTIONS += nodoc
 %:
 	dh $@
 
-override_dh_auto_test:
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+override_dh_auto_build:
+	dh_auto_build
 	# Regenerate repacked files
 	cat tests/sa.sam | samtools view -Sb - > tests/sa.bam
 	samtools index tests/sa.bam tests/sa.bam.bai
@@ -14,6 +14,9 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	samtools index tests/HG02002.bam tests/HG02002.bam.bai
 	tabix tests/test.vcf.gz
 	bcftools index tests/test.bcf
+
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	nim c --nimcache:$(CURDIR)/tests/nimcache tests/all.nim
 	tests/all
 endif


=====================================
debian/tests/run-unit-test
=====================================
@@ -8,7 +8,7 @@ if [ "$AUTOPKGTEST_TMP" = "" ] ; then
   trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cp -a /usr/share/doc/hts-nim-examples/* $AUTOPKGTEST_TMP
+cp -a /usr/share/doc/nim-hts-examples/* $AUTOPKGTEST_TMP
 
 cd $AUTOPKGTEST_TMP
 gunzip -r *



View it on GitLab: https://salsa.debian.org/med-team/nim-hts/-/compare/2be53f8b0b0c83c275815693018756ac440d6c67...e40e33e4b818cc3b84cd0d9db81fe711f5904afa

-- 
View it on GitLab: https://salsa.debian.org/med-team/nim-hts/-/compare/2be53f8b0b0c83c275815693018756ac440d6c67...e40e33e4b818cc3b84cd0d9db81fe711f5904afa
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