[med-svn] [Git][med-team/libmaus2][master] 4 commits: routine-update: New upstream version

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / libmaus2


Commits:
ffb47d16 by Étienne Mollier at 2020-11-11T17:51:38+01:00
routine-update: New upstream version

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9aaebf48 by Étienne Mollier at 2020-11-11T17:51:51+01:00
New upstream version 2.0.762+dfsg
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1b2058de by Étienne Mollier at 2020-11-11T17:51:55+01:00
Update upstream source from tag 'upstream/2.0.762+dfsg'

Update to upstream version '2.0.762+dfsg'
with Debian dir 17c6fc2f09acd7eb0463aa85acb1c14d656967b9
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7cc30ef9 by Étienne Mollier at 2020-11-12T15:58:47+01:00
dlopen-libz.so.1.patch applied upstream

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30 changed files:

- ChangeLog
- Makefile.am
- README.md
- configure.ac
- debian/changelog
- − debian/patches/dlopen-libz.so.1.patch
- − debian/patches/series
- − libmaus2irods.pc.in
- src/Makefile.am
- src/libmaus2/LibMausConfig.hpp.in
- src/libmaus2/aio/FileRemoval.cpp
- src/libmaus2/aio/InputStreamFactory.hpp
- src/libmaus2/aio/InputStreamFactoryContainer.hpp
- src/libmaus2/aio/OFStreamOutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactory.hpp
- src/libmaus2/aio/OutputStreamFactoryContainer.hpp
- src/libmaus2/aio/PosixFdOutputStreamFactory.hpp
- + src/libmaus2/aio/SecrecyInputStreamFactory.cpp
- src/libmaus2/irods/IRodsCommProvider.hpp → src/libmaus2/aio/SecrecyInputStreamFactory.hpp
- + src/libmaus2/aio/SecrecyOutputStreamFactory.cpp
- src/libmaus2/irods/IRodsFileBase.hpp → src/libmaus2/aio/SecrecyOutputStreamFactory.hpp
- src/libmaus2/irods/IRodsInputStream.hpp → src/libmaus2/aio/URLObject.hpp
- src/libmaus2/alignment/SimpleLocalAligner.hpp
- src/libmaus2/autoarray/AutoArray.hpp
- src/libmaus2/avl/AVLSet.hpp
- src/libmaus2/bambam/BamBlockWriterBaseFactory.hpp
- src/libmaus2/bambam/parallel/BlockSortControl.hpp
- src/libmaus2/bitio/BitVector.hpp
- src/libmaus2/dazzler/align/AlignmentWriter.hpp
- src/libmaus2/dazzler/align/LasSort2.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/compare/e0b6a07f46aadd614879a167b0ede1963ca70274...7cc30ef9a6532439a9dcece30d33b0156cfa4c99

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View it on GitLab: https://salsa.debian.org/med-team/libmaus2/-/compare/e0b6a07f46aadd614879a167b0ede1963ca70274...7cc30ef9a6532439a9dcece30d33b0156cfa4c99
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