[med-svn] [Git][med-team/profbval][master] 11 commits: routine-update: Standards-Version: 4.5.1
Andreas Tille
gitlab at salsa.debian.org
Thu Nov 26 07:23:40 GMT 2020
Andreas Tille pushed to branch master at Debian Med / profbval
Commits:
59f1ecf6 by Andreas Tille at 2020-11-26T08:04:44+01:00
routine-update: Standards-Version: 4.5.1
- - - - -
51801d40 by Andreas Tille at 2020-11-26T08:04:45+01:00
routine-update: debhelper-compat 13
- - - - -
537d43c1 by Andreas Tille at 2020-11-26T08:04:53+01:00
routine-update: Remove trailing whitespace in debian/changelog
- - - - -
9b259418 by Andreas Tille at 2020-11-26T08:04:53+01:00
routine-update: Remove trailing whitespace in debian/control
- - - - -
77cb52d4 by Andreas Tille at 2020-11-26T08:04:53+01:00
routine-update: Add salsa-ci file
- - - - -
9752d147 by Andreas Tille at 2020-11-26T08:04:53+01:00
routine-update: Rules-Requires-Root: no
- - - - -
ad2f1266 by Andreas Tille at 2020-11-26T08:05:02+01:00
Set upstream metadata fields: Bug-Submit (from ./configure).
Changes-By: lintian-brush
- - - - -
dbfcbc99 by Andreas Tille at 2020-11-26T08:05:02+01:00
Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
Changes-By: lintian-brush
- - - - -
1671855b by Andreas Tille at 2020-11-26T08:05:03+01:00
Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
Changes-By: lintian-brush
Fixes: lintian: uses-deprecated-adttmp
See-also: https://lintian.debian.org/tags/uses-deprecated-adttmp.html
- - - - -
d70f93fd by Andreas Tille at 2020-11-26T08:05:03+01:00
routine-update: watch file standard 4
- - - - -
7e6a9333 by Andreas Tille at 2020-11-26T08:08:52+01:00
routine-update: Ready to upload to unstable
- - - - -
7 changed files:
- debian/changelog
- − debian/compat
- debian/control
- + debian/salsa-ci.yml
- debian/tests/installation-test
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,19 @@
+profbval (1.0.22-7) unstable; urgency=medium
+
+ * Standards-Version: 4.5.1 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Remove trailing whitespace in debian/control (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Set upstream metadata fields: Bug-Submit (from ./configure).
+ * Remove obsolete field Name from debian/upstream/metadata (already present in
+ machine-readable debian/copyright).
+ * Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
+ * watch file standard 4 (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Thu, 26 Nov 2020 08:05:03 +0100
+
profbval (1.0.22-6) unstable; urgency=medium
* pp-popularity-contest only suggested
@@ -18,7 +34,7 @@ profbval (1.0.22-5) unstable; urgency=medium
profbval (1.0.22-4) unstable; urgency=medium
* Team upload.
- * added allow-stderr restriction to debian/tests/control - in case when
+ * added allow-stderr restriction to debian/tests/control - in case when
recommended package `pp-popularity-contest` is not installed,
and described that in debian/README.test
* add hardening
@@ -28,7 +44,7 @@ profbval (1.0.22-4) unstable; urgency=medium
profbval (1.0.22-3) unstable; urgency=medium
* Team upload.
- * changed citation in debian/upstream/metadata from search string to
+ * changed citation in debian/upstream/metadata from search string to
corresponding PMID article link
* add simple testsuite
* cme fix dpkg-control
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -5,12 +5,13 @@ Uploaders: Laszlo Kajan <lkajan at rostlab.org>,
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
perl
-Standards-Version: 4.2.1
+Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/profbval
Vcs-Git: https://salsa.debian.org/med-team/profbval.git
Homepage: https://www.rostlab.org/owiki/index.php/PROFbval
+Rules-Requires-Root: no
Package: profbval
Architecture: all
@@ -22,11 +23,11 @@ Recommends: blast2,
profphd
Suggests: pp-popularity-contest
Description: predictor of flexible/rigid protein residues from sequence
- PROFbval can be useful for both protein structure and
- function predictions. For instance, a biologist can locate potentially
- antigenic determinants by identifying the most flexible residues on the
- protein surface. Additionally, a crystallographer can locate residues that
- potentially have high experimental B-values.
+ PROFbval can be useful for both protein structure and
+ function predictions. For instance, a biologist can locate potentially
+ antigenic determinants by identifying the most flexible residues on the
+ protein surface. Additionally, a crystallographer can locate residues that
+ potentially have high experimental B-values.
.
PROFbval takes the following input, further described on profbval(1):
* a protein sequence in a FASTA file
@@ -35,8 +36,8 @@ Description: predictor of flexible/rigid protein residues from sequence
.
Background: the mobility of a given residue on the protein surface is related
to its functional role.
- Therefore, identification of extremely rigid or flexible
- residues on the protein surface is helpful for identifying functionally
- important residues in proteins. A common measure of atom mobility in proteins
+ Therefore, identification of extremely rigid or flexible
+ residues on the protein surface is helpful for identifying functionally
+ important residues in proteins. A common measure of atom mobility in proteins
is B-value data from x-ray crystallography structures. PROFbval is the first
tool to predict normalized backbone B-values from amino-acid sequence.
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/tests/installation-test
=====================================
@@ -6,12 +6,12 @@ set -e
pkg=profbval
-if [ "$ADTTMP" = "" ] ; then
- ADTTMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
- trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+ AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+ trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
-cd $ADTTMP
+cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/${pkg}/examples/* .
find . -type f -name "*.gz" -exec gunzip \{\} \;
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,4 @@
-Name: profbval
+Bug-Submit: https://rostlab.org/cgi-bin/bugzilla3/enter_bug.cgi?product=profbval
Reference:
- Author: Avner Schlessinger and Guy Yachdav and Burkhard Rost
Title: >
=====================================
debian/watch
=====================================
@@ -1,2 +1,2 @@
-version=3
+version=4
opts=pasv ftp://rostlab.org/profbval/profbval-([0-9.]+)\.tar\.gz
View it on GitLab: https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a
--
View it on GitLab: https://salsa.debian.org/med-team/profbval/-/compare/8797fd8a6e5b86dbe56901fc6b26cefb83cb638c...7e6a9333aa4652a1330dd48cd607d3fdac80ae9a
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