Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8d0d5d63 by Andreas Tille at 2020-11-28T13:45:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,36 +1,36 @@
-Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
+Last-Update: Sat, 28 Nov 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {imaging,covid-19} |
+ dcmtk | 177 | {imaging,covid-19} |
orthanc | 94 | {covid-19,imaging,practice} |
- orthanc-wsi | 47 | {oncology,practice,covid-19,his,imaging,laboratory} |
- gdcm | 38 | {imaging-dev} |
+ orthanc-wsi | 47 | {his,oncology,imaging,laboratory,covid-19,practice} |
+ gdcm | 36 | {imaging-dev} |
htsjdk | 29 | {bio-dev} |
dcm2niix | 21 | {imaging} |
- dicomscope | 20 | {imaging} |
- gdcm | 19 | {covid-19,imaging} |
- dicom3tools | 18 | {imaging} |
- gnumed-server | 18 | {practice,covid-19} |
+ dicom3tools | 20 | {imaging} |
+ gdcm | 20 | {covid-19,imaging} |
+ dicomscope | 19 | {imaging} |
+ gnumed-server | 18 | {covid-19,practice} |
ngs-sdk | 16 | {bio-dev} |
gdcm | 13 | {imaging-dev} |
+ adun.app | 12 | {bio} |
invesalius | 12 | {imaging} |
- adun.app | 11 | {bio} |
+ minc-tools | 12 | {imaging} |
+ nifticlib | 12 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- nifticlib | 11 | {imaging-dev} |
- nifticlib | 11 | {imaging} |
- minc-tools | 10 | {imaging} |
+ nifticlib | 10 | {imaging-dev} |
+ openslide | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
- openslide | 9 | {imaging} |
pixelmed | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
+ biosig | 8 | {imaging,physics} |
+ king | 8 | {imaging,typesetting} |
orthanc-webviewer | 8 | {imaging} |
- biosig | 7 | {imaging,physics} |
+ vtk-dicom | 8 | {imaging} |
insighttoolkit4 | 7 | {imaging-dev} |
- king | 7 | {imaging,typesetting} |
librg-utils-perl | 7 | {bio} |
- multiqc | 7 | {covid-19,bio} |
+ multiqc | 7 | {bio,covid-19} |
biojava-live | 6 | {bio-dev} |
ea-utils | 6 | {bio} |
jebl2 | 6 | {bio-dev} |
@@ -48,26 +48,27 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
orthanc-dicomweb | 5 | {covid-19,imaging} |
bamkit | 4 | {bio,covid-19} |
biomaj3-cli | 4 | {cloud} |
- bio-tradis | 4 | {bio,bio-dev} |
+ bio-tradis | 4 | {bio-dev,bio} |
emboss-explorer | 4 | {bio} |
- fastlink | 4 | {cloud,bio} |
+ fastlink | 4 | {bio,cloud} |
libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
mipe | 4 | {bio,cloud} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
- paraclu | 4 | {cloud,bio} |
+ paraclu | 4 | {bio,cloud} |
rambo-k | 4 | {bio} |
+ salmon | 4 | {covid-19,bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
staden | 4 | {bio} |
tracetuner | 4 | {bio} |
anfo | 3 | {bio,cloud} |
arden | 3 | {cloud,bio} |
assemblytics | 3 | {bio} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
- clonalframeml | 3 | {bio,covid-19} |
+ clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {bio,cloud} |
@@ -83,15 +84,14 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
predictprotein | 3 | {bio} |
- prottest | 3 | {bio,bio-phylogeny} |
+ prottest | 3 | {bio-phylogeny,bio} |
quorum | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
- salmon | 3 | {bio,covid-19} |
sibsim4 | 3 | {cloud,bio} |
spaced | 3 | {bio} |
stacks | 3 | {bio} |
- biosig | 2 | {imaging-dev,physics} |
+ biosig | 2 | {physics,imaging-dev} |
brig | 2 | {bio} |
busco | 2 | {covid-19,bio} |
canu | 2 | {bio} |
@@ -104,7 +104,7 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
hinge | 2 | {bio} |
ipig | 2 | {bio} |
jellyfish1 | 2 | {bio} |
- jmodeltest | 2 | {bio-phylogeny,bio} |
+ jmodeltest | 2 | {bio,bio-phylogeny} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libmuscle | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
@@ -112,9 +112,10 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
mhap | 2 | {bio-ngs,bio} |
microbegps | 2 | {bio} |
opencfu | 2 | {laboratory} |
+ oscar | 2 | {data,tools,practice} |
papyrus | 2 | {imaging-dev} |
pbdagcon | 2 | {bio} |
- perm | 2 | {bio,cloud} |
+ perm | 2 | {cloud,bio} |
placnet | 2 | {bio} |
prime-phylo | 2 | {bio,cloud} |
proalign | 2 | {bio-phylogeny,bio} |
@@ -122,8 +123,8 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
qcumber | 2 | {bio} |
rdp-alignment | 2 | {bio} |
rdp-classifier | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
- samblaster | 2 | {bio,covid-19} |
+ rtax | 2 | {bio,cloud} |
+ samblaster | 2 | {covid-19,bio} |
scrm | 2 | {bio} |
sga | 2 | {bio} |
sight | 2 | {imaging} |
@@ -133,21 +134,21 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
suitename | 2 | {bio} |
surankco | 2 | {bio} |
yaha | 2 | {bio} |
- zalign | 2 | {cloud,bio} |
+ zalign | 2 | {bio,cloud} |
atropos | 1 | {bio} |
bambamc | 1 | {bio-dev} |
- bbmap | 1 | {bio,covid-19} |
- biosig | 1 | {imaging-dev,physics} |
+ bbmap | 1 | {covid-19,bio} |
+ biosig | 1 | {physics,imaging-dev} |
blasr | 1 | {bio,bio-ngs} |
blimps | 1 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
+ cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
- delly | 1 | {covid-19,bio} |
+ delly | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
gatb-core | 1 | {bio} |
- htscodecs | 1 | {covid-19,bio-dev} |
- intake | 1 | {bio-dev,bio} |
+ htscodecs | 1 | {bio-dev,covid-19} |
+ intake | 1 | {bio,bio-dev} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
libbpp-phyl-omics | 1 | {bio-dev} |
@@ -166,13 +167,12 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
libqes | 1 | {bio-dev} |
libseqlib | 1 | {bio-dev} |
libstatgen | 1 | {bio-dev} |
- nanosv | 1 | {bio,covid-19} |
+ nanosv | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {tools,practice,data} |
pbseqlib | 1 | {bio-dev} |
- plasmidid | 1 | {covid-19,bio} |
+ plasmidid | 1 | {bio,covid-19} |
plasmidseeker | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
@@ -182,16 +182,16 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
simpleitk | 1 | {imaging-dev} |
simrisc | 1 | {oncology} |
srf | 1 | {bio-dev} |
- thesias | 1 | {bio,covid-19} |
+ thesias | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
tvc | 1 | {bio} |
vienna-rna | 1 | {bio,covid-19} |
yanagiba | 1 | {covid-19,bio} |
- acedb | 0 | {cloud,bio} |
+ acedb | 0 | {bio,cloud} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- bustools | 0 | {bio,covid-19} |
+ bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {bio,cloud} |
dextractor | 0 | {covid-19,bio} |
@@ -219,19 +219,19 @@ Last-Update: Sat, 28 Nov 2020 01:42:03 +0000
pigx-rnaseq | 0 | {bio,covid-19} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {bio-phylogeny,covid-19,bio} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
+ pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {bio-dev,covid-19} |
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
spaln | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {covid-19,bio} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8d0d5d63aa64e65f0af3b4a2c0c34309282a9d3b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8d0d5d63aa64e65f0af3b4a2c0c34309282a9d3b
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201128/7afc8cbe/attachment-0001.html>