[med-svn] [Git][med-team/bowtie2][master] 4 commits: New upstream version 2.4.2

[Alexandre Mestiashvili]

Alexandre Mestiashvili pushed to branch master at Debian Med / bowtie2


Commits:
a45f4532 by Alexandre Mestiashvili at 2020-10-07T19:26:50+02:00
New upstream version 2.4.2
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6004b45f by Alexandre Mestiashvili at 2020-10-07T19:27:12+02:00
Update upstream source from tag 'upstream/2.4.2'

Update to upstream version '2.4.2'
with Debian dir 713d84a42faf0a971ce12ffc958c650b0aca5832
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4071cec9 by Alexandre Mestiashvili at 2020-10-07T20:03:57+02:00
refresh patches, drop applied by upstream gcc10_ftbfs_invalid_dquote_char.patch

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52d14f20 by Alexandre Mestiashvili at 2020-10-07T20:06:11+02:00
Apply cme fix dpkg, drop version from libsimde-dev

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30 changed files:

- + .gitignore
- + .travis.yml
- + BOWTIE2_VERSION
- CMakeLists.txt
- MANUAL
- MANUAL.markdown
- Makefile
- NEWS
- README.md
- − VERSION
- aln_sink.cpp
- blockwise_sa.h
- bowtie2
- bowtie2-build
- bt2_dp.cpp
- bt2_search.cpp
- debian/control
- debian/patches/correct_64bit_test
- debian/patches/do-not-rebuild-during-test.patch
- − debian/patches/gcc10_ftbfs_invalid_dquote_char.patch
- debian/patches/hardening.patch
- debian/patches/no_sanity
- debian/patches/reproducible.patch
- debian/patches/series
- debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
- doc/manual.html
- doc/release.txt
- doc/website/manual.ssi
- doc/website/old_news.ssi
- doc/website/recent_news.ssi


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/79895b46dacd5712da94b514cc40634c73bc2a36...52d14f202ed33f1c6ad60e936e4cfebaf8d3628d

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View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/79895b46dacd5712da94b514cc40634c73bc2a36...52d14f202ed33f1c6ad60e936e4cfebaf8d3628d
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