[med-svn] [Git][med-team/hyphy][master] 10 commits: routine-update: New upstream version

[Étienne Mollier]

Étienne Mollier pushed to branch master at Debian Med / hyphy


Commits:
5c6383e3 by Étienne Mollier at 2020-10-08T22:48:25+02:00
routine-update: New upstream version

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b29971ab by Étienne Mollier at 2020-10-08T22:48:44+02:00
New upstream version 2.5.19+dfsg
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5cd95e6b by Étienne Mollier at 2020-10-08T22:48:51+02:00
Update upstream source from tag 'upstream/2.5.19+dfsg'

Update to upstream version '2.5.19+dfsg'
with Debian dir 746c33edb1643525463009ddcf5f8a7778ffd55f
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0e906cc8 by Étienne Mollier at 2020-10-08T22:55:25+02:00
Refresh patches

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0127e9ed by Étienne Mollier at 2020-10-09T00:14:42+02:00
fix_brace_mismatch.patch applied upstream

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d048142a by Étienne Mollier at 2020-10-09T00:33:47+02:00
add manual for hyphy

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948243b5 by Étienne Mollier at 2020-10-09T00:34:14+02:00
add manual page for HYPHYMPI

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713f7e22 by Étienne Mollier at 2020-10-09T00:35:28+02:00
add changelog entry for manual pages

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b8f7982f by Étienne Mollier at 2020-10-10T15:25:24+02:00
d/m/hyphy.1: update page to 2.5.19

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b8c39452 by Étienne Mollier at 2020-10-10T15:29:41+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- + .coveralls.condarc
- + .coveralls.env.yml
- + .github/workflows/coverage.yml
- .travis.yml
- CMakeLists.txt
- debian/changelog
- + debian/hyphy-mpi.manpages
- + debian/hyphy-pt.manpages
- + debian/manuals/HYPHYMPI.1
- + debian/manuals/hyphy.1
- − debian/patches/fix_brace_mismatch.patch
- debian/patches/rm_arch_specific_flags.patch
- debian/patches/series
- debian/patches/use_debian_sqlite.patch
- res/TemplateBatchFiles/CleanStopCodons.bf
- res/TemplateBatchFiles/GARD.bf
- res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
- res/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/models/codon.bf
- res/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/alignments.bf
- res/TemplateBatchFiles/libv3/tasks/distances.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/batchlan.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/a3361c89d3347c324dac6a7b3529f0ffab4510a5...b8c39452abc501bfc5ef6bee39675102ef402004

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/a3361c89d3347c324dac6a7b3529f0ffab4510a5...b8c39452abc501bfc5ef6bee39675102ef402004
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