[med-svn] [Git][med-team/hyphy][upstream] New upstream version 2.5.19+dfsg

[Étienne Mollier]

Étienne Mollier pushed to branch upstream at Debian Med / hyphy


Commits:
b29971ab by Étienne Mollier at 2020-10-08T22:48:44+02:00
New upstream version 2.5.19+dfsg
- - - - -


30 changed files:

- + .coveralls.condarc
- + .coveralls.env.yml
- + .github/workflows/coverage.yml
- .travis.yml
- CMakeLists.txt
- res/TemplateBatchFiles/CleanStopCodons.bf
- res/TemplateBatchFiles/GARD.bf
- res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
- res/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/models/codon.bf
- res/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/alignments.bf
- res/TemplateBatchFiles/libv3/tasks/distances.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/batchlan.cpp
- src/core/batchlan2.cpp
- src/core/batchlanruntime.cpp
- src/core/dataset_filter.cpp
- src/core/formula.cpp
- src/core/global_things.cpp
- src/core/include/formula.h
- src/core/include/hy_strings.h
- src/core/include/likefunc.h
- src/core/include/matrix.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/b29971ab425e52781ca8a3847888371755ed60a3

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/b29971ab425e52781ca8a3847888371755ed60a3
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