[med-svn] [Git][med-team/ivar][master] 5 commits: New upstream version 1.2.3+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / ivar


Commits:
701a9ea3 by Andreas Tille at 2020-10-14T09:15:32+02:00
New upstream version 1.2.3+dfsg
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4e3d413c by Andreas Tille at 2020-10-14T09:15:32+02:00
routine-update: New upstream version

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b9d0d22a by Andreas Tille at 2020-10-14T09:15:33+02:00
Update upstream source from tag 'upstream/1.2.3+dfsg'

Update to upstream version '1.2.3+dfsg'
with Debian dir 60c6c3b8d94e86f631d66bea57245c98684985ba
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40b61ed9 by Andreas Tille at 2020-10-14T09:15:38+02:00
Trim trailing whitespace.

Changes-By: lintian-brush
Fixes: lintian: trailing-whitespace
See-also: https://lintian.debian.org/tags/trailing-whitespace.html

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9c57ca2f by Andreas Tille at 2020-10-14T09:17:03+02:00
routine-update: Ready to upload to unstable

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30 changed files:

- configure.ac
- data/pair_information.tsv
- debian/changelog
- debian/rules
- docs/MANUAL.md
- docs/html/index.html
- docs/html/manualpage.html
- docs/latex/index.tex
- docs/latex/manualpage.tex
- docs/man/man3/cookbookpage.3
- docs/man/man3/installpage.3
- docs/man/man3/manualpage.3
- − patches/fix_pipeline_link.patch
- − patches/series
- src/call_consensus_pileup.cpp
- src/call_consensus_pileup.h
- src/call_variants.cpp
- src/get_masked_amplicons.cpp
- src/ivar.cpp
- src/primer_bed.cpp
- src/ref_seq.cpp
- src/ref_seq.h
- src/trim_primer_quality.cpp
- src/trim_primer_quality.h
- tests/Makefile.am
- tests/check_quality_trim.cpp
- tests/test_consensus_min_depth.cpp
- + tests/test_consensus_seq_id.cpp
- tests/test_getmasked.cpp
- tests/test_primer_trim.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/a05e6ab556eba22a5f86c4b36a4335e4a85cda89...9c57ca2f99e6482a048379871d832831b40e37c6

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View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/a05e6ab556eba22a5f86c4b36a4335e4a85cda89...9c57ca2f99e6482a048379871d832831b40e37c6
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