[med-svn] [Git][med-team/last-align][master] 5 commits: New upstream version 1133

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / last-align


Commits:
c9d42e75 by Nilesh Patra at 2020-10-17T13:16:16+05:30
New upstream version 1133
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716b982a by Nilesh Patra at 2020-10-17T13:16:16+05:30
routine-update: New upstream version

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163ca1b1 by Nilesh Patra at 2020-10-17T13:16:19+05:30
Update upstream source from tag 'upstream/1133'

Update to upstream version '1133'
with Debian dir bff95b435ee9b5cfb21611ed52fcf7f4fd370f75
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d6b81af6 by Nilesh Patra at 2020-10-17T13:20:08+05:30
Refresh patches

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d6f8dcc9 by Nilesh Patra at 2020-10-17T13:20:28+05:30
routine-update: Ready to upload to unstable

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30 changed files:

- ChangeLog.txt
- debian/changelog
- debian/patches/2to3.patch
- debian/patches/fix-959866.patch
- debian/patches/helpMakefiles.patch
- debian/patches/simde
- scripts/last-dotplot
- src/Alignment.cc
- src/Alignment.hh
- src/AlignmentWrite.cc
- src/CyclicSubsetSeed.cc
- src/CyclicSubsetSeed.hh
- src/GappedXdropAligner.cc
- src/GappedXdropAligner.hh
- src/GappedXdropAligner2qual.cc
- + src/GappedXdropAlignerFrame.cc
- src/GappedXdropAlignerInl.hh
- src/GappedXdropAlignerPssm.cc
- src/GeneticCode.cc
- src/GeneticCode.hh
- src/LastEvaluer.cc
- src/LastEvaluer.hh
- src/LastalArguments.cc
- src/LastalArguments.hh
- src/ScoreMatrix.cc
- src/ScoreMatrix.hh
- src/ScoreMatrixRow.hh
- src/SegmentPair.cc
- src/SegmentPair.hh
- src/SubsetSuffixArraySearch.cc


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/b79c20312752cece80f9b58e6b7cd330bbb0c419...d6f8dcc9f61aa96a2437138eab65296dd5363455

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View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/b79c20312752cece80f9b58e6b7cd330bbb0c419...d6f8dcc9f61aa96a2437138eab65296dd5363455
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