[med-svn] [Git][med-team/libseqlib][master] 3 commits: more symbols updates
Michael R. Crusoe
gitlab at salsa.debian.org
Mon Oct 26 15:52:59 GMT 2020
Michael R. Crusoe pushed to branch master at Debian Med / libseqlib
Commits:
0151f502 by Michael R. Crusoe at 2020-10-26T16:47:44+01:00
more symbols updates
- - - - -
14569831 by Michael R. Crusoe at 2020-10-26T16:51:40+01:00
Mark most of Debian's patches as not appropriate for forwarding to upstream.
- - - - -
6cb33405 by Michael R. Crusoe at 2020-10-26T16:52:14+01:00
release 1.1.2+dfsg-9
- - - - -
11 changed files:
- debian/changelog
- debian/libseqlib1.symbols
- debian/patches/adapt_to_debian_fermi-lite.patch
- debian/patches/dynamic_lib.patch
- debian/patches/fix_fermi-lite_usage.patch
- debian/patches/fix_htslib_usage.patch
- debian/patches/fml_include_path.patch
- debian/patches/use_debian_packaged_jsoncpp.patch
- debian/patches/use_debian_packaged_libs.patch
- debian/patches/use_debian_packaged_ssw.patch
- debian/patches/use_private_htslib_headers.patch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+libseqlib (1.1.2+dfsg-9) unstable; urgency=medium
+
+ * Team upload.
+ * More symbols updates.
+ * Mark most of Debian's patches as not appropriate for forwarding to
+ upstream.
+
+ -- Michael R. Crusoe <crusoe at debian.org> Mon, 26 Oct 2020 16:51:53 +0100
+
libseqlib (1.1.2+dfsg-8) unstable; urgency=medium
* Team upload.
=====================================
debian/libseqlib1.symbols
=====================================
@@ -1,4 +1,4 @@
-# SymbolsHelper-Confirmed: 1.1.2 amd64 arm64 armel armhf i386 ia64 kfreebsd-amd64 m68k mips64el mipsel ppc64el riscv64 sh4 x32
+# SymbolsHelper-Confirmed: 1.1.2 alpha amd64 arm64 armel armhf i386 ia64 kfreebsd-amd64 m68k mips64el mipsel powerpc ppc64 ppc64el riscv64 s390x sh4 sparc64 x32
libseqlib.so.1 libseqlib1 #MINVER#
* Build-Depends-Package: libseqlib-dev
(optional=templinst)_ZN12aho_corasick10basic_trieIcE10parse_textENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
@@ -32,7 +32,7 @@ libseqlib.so.1 libseqlib1 #MINVER#
_ZN6SeqLib11FastqReader4OpenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
_ZN6SeqLib11FastqReaderC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
_ZN6SeqLib11FastqReaderC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
- (arch=amd64)_ZN6SeqLib11scrubStringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_ at Base 1.1.2
+ (arch=amd64 arm64 armel armhf x32)_ZN6SeqLib11scrubStringERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_ at Base 1.1.2
_ZN6SeqLib13GenomicRegion3PadEi at Base 1.1.2
_ZN6SeqLib13GenomicRegionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE at Base 1.1.2
_ZN6SeqLib13GenomicRegionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_RKNS_9BamHeaderE at Base 1.1.2
@@ -66,9 +66,6 @@ libseqlib.so.1 libseqlib1 #MINVER#
(optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE13CreateTreeMapEv at Base 1.1.2
(optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE14CoordinateSortEv at Base 1.1.2
(optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE25MergeOverlappingIntervalsEv at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE6ConcatERKS2_ at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE7ReadBEDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEE7ReadVCFERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE at Base 1.1.2
(optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE at Base 1.1.2
(optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC1Ev at Base 1.1.2
(optional=templinst)_ZN6SeqLib23GenomicRegionCollectionINS_13GenomicRegionEEC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE at Base 1.1.2
@@ -86,8 +83,8 @@ libseqlib.so.1 libseqlib1 #MINVER#
_ZN6SeqLib4_Bam20open_BAM_for_readingEv at Base 1.1.2
_ZN6SeqLib4_Bam9SetRegionERKNS_13GenomicRegionE at Base 1.1.2
_ZN6SeqLib4_Bam9load_readERNS_9BamRecordE at Base 1.1.2
- (arch=amd64)_ZN6SeqLib4_BamC1ERKS0_ at Base 1.1.2
- (arch=amd64)_ZN6SeqLib4_BamC2ERKS0_ at Base 1.1.2
+ _ZN6SeqLib4_BamC1ERKS0_ at Base 1.1.2
+ _ZN6SeqLib4_BamC2ERKS0_ at Base 1.1.2
_ZN6SeqLib4_BamD1Ev at Base 1.1.2
_ZN6SeqLib4_BamD2Ev at Base 1.1.2
_ZN6SeqLib5CigarC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
@@ -101,17 +98,17 @@ libseqlib.so.1 libseqlib1 #MINVER#
_ZN6SeqLib6Filter10ReadFilterD1Ev at Base 1.1.2
_ZN6SeqLib6Filter10ReadFilterD2Ev at Base 1.1.2
_ZN6SeqLib6Filter11AhoCorasick12TrieFromFileERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
- _ZN6SeqLib6Filter11AhoCorasickD1Ev at Base 1.1.2
- _ZN6SeqLib6Filter11AhoCorasickD2Ev at Base 1.1.2
+ (arch=!alpha !mips64el !ppc64 !ppc64el !riscv64 !s390x !sh4 !sparc64)_ZN6SeqLib6Filter11AhoCorasickD1Ev at Base 1.1.2
+ (arch=!alpha !mips64el !ppc64 !ppc64el !riscv64 !s390x !sh4 !sparc64)_ZN6SeqLib6Filter11AhoCorasickD2Ev at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRule12addMotifRuleERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRule12parseSeqLineERKN4Json5ValueE at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRule12parseSubLineERKN4Json5ValueE at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRule7isValidERKNS_9BamRecordE at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRule9parseJsonERKN4Json5ValueE at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRuleC1ERKS1_ at Base 1.1.2
- (arch=amd64)_ZN6SeqLib6Filter12AbstractRuleC1Ev at Base 1.1.2
+ _ZN6SeqLib6Filter12AbstractRuleC1Ev at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRuleC2ERKS1_ at Base 1.1.2
- (arch=amd64)_ZN6SeqLib6Filter12AbstractRuleC2Ev at Base 1.1.2
+ _ZN6SeqLib6Filter12AbstractRuleC2Ev at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRuleD1Ev at Base 1.1.2
_ZN6SeqLib6Filter12AbstractRuleD2Ev at Base 1.1.2
_ZN6SeqLib6Filter15convert_to_boolERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
@@ -120,7 +117,7 @@ libseqlib.so.1 libseqlib1 #MINVER#
_ZN6SeqLib6Filter20ReadFilterCollectionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE at Base 1.1.2
_ZN6SeqLib6Filter20ReadFilterCollectionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_9BamHeaderE at Base 1.1.2
_ZN6SeqLib6Filter4Flag9parseJsonERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
- (arch=amd64)_ZN6SeqLib6Filter5Range7isValidEi at Base 1.1.2
+ _ZN6SeqLib6Filter5Range7isValidEi at Base 1.1.2
_ZN6SeqLib6Filter5Range9parseJsonERKN4Json5ValueERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
_ZN6SeqLib6Filter8FlagRule14parse_json_intERKN4Json5ValueE at Base 1.1.2
_ZN6SeqLib6Filter8FlagRule7isValidERKNS_9BamRecordE at Base 1.1.2
@@ -132,7 +129,7 @@ libseqlib.so.1 libseqlib1 #MINVER#
_ZN6SeqLib6FilterlsERSoRKNS0_8FlagRuleE at Base 1.1.2
(optional=templinst)_ZN6SeqLib8tostringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 1.1.2
(optional=templinst)_ZN6SeqLib8tostringIjEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 1.1.2
- (optional=templinst|arch=amd64 arm64 ia64 kfreebsd-amd64 mips64el ppc64el riscv64)_ZN6SeqLib9AddCommasIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 1.1.2
+ (optional=templinst)_ZN6SeqLib9AddCommasIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_ at Base 1.1.2
_ZN6SeqLib9BamHeader21ConstructName2IDTableEv at Base 1.1.2
_ZN6SeqLib9BamHeaderC1EPK9sam_hdr_t at Base 1.1.2
_ZN6SeqLib9BamHeaderC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
@@ -179,7 +176,7 @@ libseqlib.so.1 libseqlib1 #MINVER#
_ZN6SeqLiblsERSoRKNS_10BWAWrapperE at Base 1.1.2
_ZN6SeqLiblsERSoRKNS_10CigarFieldE at Base 1.1.2
_ZN6SeqLiblsERSoRKNS_13GenomicRegionE at Base 1.1.2
- (arch=amd64)_ZN6SeqLiblsERSoRKNS_15PlottedReadLineE at Base 1.1.2
+ _ZN6SeqLiblsERSoRKNS_15PlottedReadLineE at Base 1.1.2
_ZN6SeqLiblsERSoRKNS_5CigarE at Base 1.1.2
_ZN6SeqLiblsERSoRKNS_9BamReaderE at Base 1.1.2
_ZN6SeqLiblsERSoRKNS_9BamRecordE at Base 1.1.2
@@ -231,7 +228,7 @@ libseqlib.so.1 libseqlib1 #MINVER#
_ZNK6SeqLib9BamRecord11CountNBasesEv at Base 1.1.2
_ZNK6SeqLib9BamRecord11PositionEndEv at Base 1.1.2
_ZNK6SeqLib9BamRecord14GetSmartIntTagERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 1.1.2
- (arch=amd64)_ZNK6SeqLib9BamRecord14ParseReadGroupB5cxx11Ev at Base 1.1.2
+ _ZNK6SeqLib9BamRecord14ParseReadGroupB5cxx11Ev at Base 1.1.2
_ZNK6SeqLib9BamRecord15AsGenomicRegionEv at Base 1.1.2
_ZNK6SeqLib9BamRecord15PairOrientationEv at Base 1.1.2
_ZNK6SeqLib9BamRecord15PositionEndMateEv at Base 1.1.2
@@ -254,44 +251,33 @@ libseqlib.so.1 libseqlib1 #MINVER#
(optional=templinst)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE5countERS7_ at Base 1.1.2
(optional=templinst|subst)_ZNKSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE19_M_find_before_nodeE{size_t}RS7_{size_t}@Base 1.1.2
(optional=templinst)_ZNKSt5ctypeIcE8do_widenEc at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_S9_EEEES6_INSC_14_Node_iteratorISA_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_ at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev at Base 1.1.2
- (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE21_M_insert_unique_nodeE{size_t}{size_t}PNSC_10_Hash_nodeISA_Lb1EEE{size_t}@Base 1.1.2
- (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2
- (optional=templinst|arch=arm64 kfreebsd-amd64 x32)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_iEEEES6_INSA_14_Node_iteratorIS8_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_ at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE5clearEv at Base 1.1.2
+ (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD1Ev at Base 1.1.2
+ (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_N6SeqLib4_BamEESaISA_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSC_18_Mod_range_hashingENSC_20_Default_ranged_hashENSC_20_Prime_rehash_policyENSC_17_Hashtable_traitsILb1ELb0ELb1EEEE12_Scoped_nodeD2Ev at Base 1.1.2
+ (optional=templinst|arch=kfreebsd-amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE10_M_emplaceIJS6_IS5_iEEEES6_INSA_14_Node_iteratorIS8_Lb0ELb1EEEbESt17integral_constantIbLb1EEDpOT_ at Base 1.1.2
+ (optional=templinst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE5clearEv at Base 1.1.2
(optional=templinst|subst)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED1Ev at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt10_HashtableINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESaIS8_ENSt8__detail10_Select1stESt8equal_toIS5_ESt4hashIS5_ENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb1ELb0ELb1EEEED2Ev at Base 1.1.2
- (optional=templinst|arch=armel armhf m68k)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIijEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE21_M_insert_unique_nodeEjjPNS7_10_Hash_nodeIS5_Lb0EEEj at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev at Base 1.1.2
- (optional=templinst|arch=ia64 mips64el ppc64el riscv64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE21_M_insert_unique_nodeEmmPNS7_10_Hash_nodeIS5_Lb0EEEm at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIimEEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE4findERS1_ at Base 1.1.2
- (optional=templinst|arch=arm64 ia64 kfreebsd-amd64 mips64el ppc64el riscv64 sh4 x32|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE10_M_emplaceIJS0_IiS4_EEEES0_INS7_14_Node_iteratorIS5_Lb0ELb0EEEbESt17integral_constantIbLb1EEDpOT_ at Base 1.1.2
+ (optional=templinst|arch=kfreebsd-amd64|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE10_M_emplaceIJS0_IiS4_EEEES0_INS7_14_Node_iteratorIS5_Lb0ELb0EEEbESt17integral_constantIbLb1EEDpOT_ at Base 1.1.2
+ (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD1Ev at Base 1.1.2
+ (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE12_Scoped_nodeD2Ev at Base 1.1.2
+ (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE4findERS1_ at Base 1.1.2
(optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv at Base 1.1.2
(optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2
- (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev at Base 1.1.2
- (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiN6SeqLib13TIntervalTreeIi{size_t}EEESaIS5_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENS7_18_Mod_range_hashingENS7_20_Default_ranged_hashENS7_20_Prime_rehash_policyENS7_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIimEESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv at Base 1.1.2
+ (optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv at Base 1.1.2
(optional=templinst|subst)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEE9_M_rehashE{size_t}RK{size_t}@Base 1.1.2
- (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED1Ev at Base 1.1.2
- (optional=templinst|subst|arch=!amd64)_ZNSt10_HashtableIiSt4pairIKiSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS5_EEESaIS8_ENSt8__detail10_Select1stESt8equal_toIiESt4hashIiENSA_18_Mod_range_hashingENSA_20_Default_ranged_hashENSA_20_Prime_rehash_policyENSA_17_Hashtable_traitsILb0ELb0ELb1EEEED2Ev at Base 1.1.2
(optional=templinst)_ZNSt11_Deque_baseIPN12aho_corasick5stateIcEESaIS3_EED1Ev at Base 1.1.2
(optional=templinst)_ZNSt11_Deque_baseIPN12aho_corasick5stateIcEESaIS3_EED2Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED2Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIimEESaIS2_EED1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIimEESaIS2_EED2Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIPN12aho_corasick5stateIcEESaIS3_EED1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIPN12aho_corasick5stateIcEESaIS3_EED2Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED2Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIcSaIcEED1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt12_Vector_baseIcSaIcEED2Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED1Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIN6SeqLib10CigarFieldESaIS1_EED2Ev at Base 1.1.2
+ (optional=templinst|subst)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIi{size_t}EESaIS2_EED1Ev at Base 1.1.2
+ (optional=templinst|subst)_ZNSt12_Vector_baseIN6SeqLib9TIntervalIi{size_t}EESaIS2_EED2Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIPN12aho_corasick5stateIcEESaIS3_EED1Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIPN12aho_corasick5stateIcEESaIS3_EED2Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED1Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIPN6SeqLib11PlottedReadESaIS2_EED2Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIcSaIcEED1Ev at Base 1.1.2
+ (optional=templinst)_ZNSt12_Vector_baseIcSaIcEED2Ev at Base 1.1.2
(optional=templinst|arch=armel riscv64)_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv at Base 1.1.2
(optional=templinst|arch=!armel !riscv64)_ZNSt15_Sp_counted_ptrIDnLN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv at Base 1.1.2
(optional=templinst|arch=armel riscv64)_ZNSt15_Sp_counted_ptrIPN12aho_corasick10basic_trieIcEELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv at Base 1.1.2
@@ -352,18 +338,6 @@ libseqlib.so.1 libseqlib1 #MINVER#
(optional=templinst|arch=armel riscv64)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE10_M_releaseEv at Base 1.1.2
(optional=templinst|arch=!armel !riscv64)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv at Base 1.1.2
(optional=templinst|arch=!armel !riscv64)_ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv at Base 1.1.2
- (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv at Base 1.1.2
- (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv at Base 1.1.2
- (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info at Base 1.1.2
- (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev at Base 1.1.2
- (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev at Base 1.1.2
- (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev at Base 1.1.2
- (optional=templinst|arch=!amd64 !armel !riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv at Base 1.1.2
- (optional=templinst|arch=!amd64 !armel !riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv at Base 1.1.2
- (optional=templinst|arch=!amd64 !armel !riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info at Base 1.1.2
- (optional=templinst|arch=!amd64 !armel !riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev at Base 1.1.2
- (optional=templinst|arch=!amd64 !armel !riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev at Base 1.1.2
- (optional=templinst|arch=!amd64 !armel !riscv64)_ZNSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev at Base 1.1.2
(optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv at Base 1.1.2
(optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv at Base 1.1.2
(optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info at Base 1.1.2
@@ -388,6 +362,12 @@ libseqlib.so.1 libseqlib1 #MINVER#
(optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev at Base 1.1.2
(optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev at Base 1.1.2
(optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev at Base 1.1.2
+ (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_destroyEv at Base 1.1.2
+ (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE10_M_disposeEv at Base 1.1.2
+ (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE14_M_get_deleterERKSt9type_info at Base 1.1.2
+ (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED0Ev at Base 1.1.2
+ (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED1Ev at Base 1.1.2
+ (optional=templinst|arch=armel riscv64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EED2Ev at Base 1.1.2
(optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv at Base 1.1.2
(optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_disposeEv at Base 1.1.2
(optional=templinst|arch=amd64)_ZNSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE14_M_get_deleterERKSt9type_info at Base 1.1.2
@@ -418,103 +398,71 @@ libseqlib.so.1 libseqlib1 #MINVER#
(optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED0Ev at Base 1.1.2
(optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED1Ev at Base 1.1.2
(optional=templinst|arch=!armel !riscv64)_ZNSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EED2Ev at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED1Ev at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN6SeqLib4_BamEED2Ev at Base 1.1.2
(optional=templinst)_ZNSt5dequeIPN12aho_corasick5stateIcEESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
- (optional=templinst|arch=amd64 arm64 kfreebsd-amd64 sh4 x32)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
+ (optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EE9push_backERKS2_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC1ERKS4_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EEC2ERKS4_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED1Ev at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN12aho_corasick7ahoemitIcEESaIS2_EED2Ev at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib10CigarFieldESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib11PlottedReadESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE15_M_range_insertIN9__gnu_cxx17__normal_iteratorIPS1_S3_EEEEvS8_T_S9_St20forward_iterator_tag at Base 1.1.2
- (optional=templinst|arch=!amd64)_ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE15_M_range_insertISt14_List_iteratorIS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EET_SB_St20forward_iterator_tag at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib13GenomicRegionESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib14HeaderSequenceESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib15PlottedReadLineESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EED1Ev at Base 1.1.2
- (optional=templinst|arch=amd64)_ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EED2Ev at Base 1.1.2
+ (optional=templinst)_ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EED1Ev at Base 1.1.2
+ (optional=templinst)_ZNSt6vectorIN6SeqLib17UnalignedSequenceESaIS1_EED2Ev at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib6Filter10ReadFilterESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib6Filter12AbstractRuleESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIN6SeqLib9BamRecordESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_ at Base 1.1.2
- (optional=templinst|arch=armel armhf)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
- (optional=templinst|arch=amd64 ppc64el)_ZNSt6vectorIN6SeqLib9TIntervalIimEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
+ (optional=templinst|arch=armel armhf i386 m68k mipsel powerpc sh4 x32)_ZNSt6vectorIN6SeqLib9TIntervalIijEESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
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(optional=templinst|subst)_ZNSt6vectorIN6SeqLib9TIntervalIi{size_t}EESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
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(optional=templinst)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 1.1.2
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(optional=templinst)_ZNSt6vectorIPN12aho_corasick5stateIcEESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_ at Base 1.1.2
(optional=templinst)_ZNSt6vectorIPN6SeqLib11PlottedReadESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_ at Base 1.1.2
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(optional=templinst)_ZNSt6vectorIPcSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 1.1.2
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(optional=templinst)_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev at Base 1.1.2
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(optional=templinst)_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev at Base 1.1.2
(optional=templinst)_ZNSt7__cxx114listIN6SeqLib13GenomicRegionESaIS2_EE4sortEv at Base 1.1.2
(optional=templinst)_ZNSt7__cxx114listIN6SeqLib13GenomicRegionESaIS2_EE5mergeEOS4_ at Base 1.1.2
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(optional=templinst)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE16_M_insert_uniqueIRKS5_EESt4pairISt17_Rb_tree_iteratorIS5_EbEOT_ at Base 1.1.2
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(optional=templinst)_ZNSt8_Rb_treeIcSt4pairIKcSt10unique_ptrIN12aho_corasick5stateIcEESt14default_deleteIS5_EEESt10_Select1stIS9_ESt4lessIcESaIS9_EE24_M_get_insert_unique_posERS1_ at Base 1.1.2
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(optional=templinst)_ZNSt8__detail9_Map_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS6_N6SeqLib4_BamEESaISB_ENS_10_Select1stESt8equal_toIS6_ESt4hashIS6_ENS_18_Mod_range_hashingENS_20_Default_ranged_hashENS_20_Prime_rehash_policyENS_17_Hashtable_traitsILb1ELb0ELb1EEELb1EEixERS8_ at Base 1.1.2
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(optional=templinst|subst)_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIPN12aho_corasick7ahoemitIcEESt6vectorIS4_SaIS4_EEEE{ssize_t}S4_NS0_5__ops15_Iter_comp_iterIZNS2_13interval_treeIS4_E15remove_overlapsERKS8_EUlRKS4_SH_E_EEEvT_T0_SL_T1_T2_ at Base 1.1.2
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(optional=templinst|arch=amd64 arm64 kfreebsd-amd64 x32)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_ at Base 1.1.2
(optional=templinst)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_ at Base 1.1.2
- (optional=templinst|arch=arm64 kfreebsd-amd64 x32)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_ at Base 1.1.2
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(optional=templinst)_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_RKS8_ at Base 1.1.2
(arch=armel armhf)_ZTI10idx_delete at Base 1.1.2
(arch=armel armhf)_ZTI14bam_hdr_delete at Base 1.1.2
@@ -535,13 +483,12 @@ libseqlib.so.1 libseqlib1 #MINVER#
(arch=!armel !riscv64)_ZTISt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
- (arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
- (arch=!amd64 !armel !riscv64)_ZTISt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTISt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTISt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
- (arch=amd64)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
+ (arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
+ (arch=alpha amd64 arm64 armhf i386 ia64 m68k mips64el mipsel powerpc ppc64 ppc64el s390x sh4 sparc64 x32)_ZTISt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTISt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTISt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
@@ -565,13 +512,12 @@ libseqlib.so.1 libseqlib1 #MINVER#
(arch=!armel !riscv64)_ZTSSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
- (arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
- (arch=!amd64 !armel !riscv64)_ZTSSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTSSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTSSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
- (arch=amd64)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
+ (arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
+ (arch=alpha amd64 arm64 armhf i386 ia64 m68k mips64el mipsel powerpc ppc64 ppc64el s390x sh4 sparc64 x32)_ZTSSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTSSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTSSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
@@ -585,13 +531,12 @@ libseqlib.so.1 libseqlib1 #MINVER#
(subst|arch=!armel !riscv64)_ZTVSt15_Sp_counted_ptrIPSt13unordered_mapIiN6SeqLib13TIntervalTreeIi{size_t}EESt4hashIiESt8equal_toIiESaISt4pairIKiS3_EEELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTVSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTVSt15_Sp_counted_ptrIPSt6vectorIN6SeqLib13GenomicRegionESaIS2_EELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
- (arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
- (arch=!amd64 !armel !riscv64)_ZTVSt19_Sp_counted_deleterIP11__hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTVSt19_Sp_counted_deleterIP6bam1_tN6SeqLib11free_deleteESaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTVSt19_Sp_counted_deleterIP7htsFile14htsFile_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
- (arch=amd64)_ZTVSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
+ (arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
+ (arch=alpha amd64 arm64 armhf i386 ia64 m68k mips64el mipsel powerpc ppc64 ppc64el s390x sh4 sparc64 x32)_ZTVSt19_Sp_counted_deleterIP9hts_idx_t10idx_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
(arch=!armel !riscv64)_ZTVSt19_Sp_counted_deleterIP9hts_itr_t14hts_itr_deleteSaIvELN9__gnu_cxx12_Lock_policyE2EE at Base 1.1.2
(arch=armel riscv64)_ZTVSt19_Sp_counted_deleterIP9sam_hdr_t14bam_hdr_deleteSaIvELN9__gnu_cxx12_Lock_policyE1EE at Base 1.1.2
=====================================
debian/patches/adapt_to_debian_fermi-lite.patch
=====================================
@@ -1,5 +1,6 @@
Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
+Forwarded: not-needed
Description: In Debian's fermi-lite 0.1-3 a name space pollution with
bwa was resolved. This solution was different to the one libseqlib
author was doing in his private copy of fermi-lite
=====================================
debian/patches/dynamic_lib.patch
=====================================
@@ -1,6 +1,7 @@
Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Create dynamic library
+Forwarded: not-needed
--- libseqlib.orig/src/Makefile.am
+++ libseqlib/src/Makefile.am
=====================================
debian/patches/fix_fermi-lite_usage.patch
=====================================
@@ -1,5 +1,6 @@
Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
+Forwarded: not-needed
Description: Upstream tries to include a header file bfc.h which
can not be found in fermi-lite. Just skip this.
.
=====================================
debian/patches/fix_htslib_usage.patch
=====================================
@@ -1,6 +1,7 @@
Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Use header files from libhts-dev
+Forwarded: not-needed
--- a/SeqLib/BamRecord.h
+++ b/SeqLib/BamRecord.h
=====================================
debian/patches/fml_include_path.patch
=====================================
@@ -1,6 +1,7 @@
Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Make sure header files will be found in /usr/include/fml
+Forwarded: not-needed
--- a/seq_test/Makefile.am
+++ b/seq_test/Makefile.am
=====================================
debian/patches/use_debian_packaged_jsoncpp.patch
=====================================
@@ -1,6 +1,7 @@
Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Do not use code copy of jsoncpp
+Forwarded: not-needed
--- libseqlib.orig/src/Makefile.am
+++ libseqlib/src/Makefile.am
=====================================
debian/patches/use_debian_packaged_libs.patch
=====================================
@@ -2,6 +2,7 @@ Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Skip subdirs in favour of Debian packaged development
libraries and do not use broken install target
+Forwarded: not-needed
--- a/Makefile.am
+++ b/Makefile.am
=====================================
debian/patches/use_debian_packaged_ssw.patch
=====================================
@@ -1,6 +1,7 @@
Author: Andreas Tille <tille at debian.org>
Last-Update: Fri, 27 Jan 2017 13:18:48 +0100
Description: Do not use code copy of libssw
+Forwarded: not-needed
--- libseqlib.orig/seq_test/Makefile.am
+++ libseqlib/seq_test/Makefile.am
=====================================
debian/patches/use_private_htslib_headers.patch
=====================================
@@ -2,6 +2,7 @@ Author: Andreas Tille <tille at debian.org>
Last-Update: Mon, 05 Mar 2018 15:39:42 +0100
Bug-Debian: https://bugs.debian.org/891745
Description: Hack around improper use of private files of htslib
+Forwarded: not-needed
--- a/SeqLib/BamWalker.h
+++ b/SeqLib/BamWalker.h
View it on GitLab: https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73
--
View it on GitLab: https://salsa.debian.org/med-team/libseqlib/-/compare/2e4489a4e15ab0ac2baa50e1ee9382299408a150...6cb334050d63d90bb8dcece24a62205fe1dacf73
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