[med-svn] [Git][med-team/soapdenovo][master] 10 commits: routine-update: Standards-Version: 4.5.0
Andreas Tille
gitlab at salsa.debian.org
Fri Oct 30 22:02:58 GMT 2020
Andreas Tille pushed to branch master at Debian Med / soapdenovo
Commits:
1dba3d77 by Andreas Tille at 2020-10-30T20:15:25+01:00
routine-update: Standards-Version: 4.5.0
- - - - -
3ee9c23e by Andreas Tille at 2020-10-30T20:15:25+01:00
routine-update: debhelper-compat 13
- - - - -
a19796d1 by Andreas Tille at 2020-10-30T20:15:29+01:00
routine-update: Secure URI in copyright format
- - - - -
e3d1e6db by Andreas Tille at 2020-10-30T20:15:29+01:00
routine-update: Remove trailing whitespace in debian/changelog
- - - - -
b2378887 by Andreas Tille at 2020-10-30T20:15:29+01:00
routine-update: Remove trailing whitespace in debian/rules
- - - - -
186471a1 by Andreas Tille at 2020-10-30T20:15:30+01:00
routine-update: Add salsa-ci file
- - - - -
fecd7146 by Andreas Tille at 2020-10-30T20:15:30+01:00
routine-update: Rules-Requires-Root: no
- - - - -
f22fb749 by Andreas Tille at 2020-10-30T20:20:00+01:00
Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
Changes-By: lintian-brush
- - - - -
4838c025 by Andreas Tille at 2020-10-30T22:52:57+01:00
Use -fcommon option to tolerate "multiple definition of"
- - - - -
2016bd76 by Andreas Tille at 2020-10-30T23:01:42+01:00
Upload to unstable
- - - - -
8 changed files:
- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- debian/patches/add_debug_symbols.patch
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,19 @@
+soapdenovo (1.05-6) unstable; urgency=medium
+
+ * Team upload.
+ * Standards-Version: 4.5.0 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Secure URI in copyright format (routine-update)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Remove trailing whitespace in debian/rules (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Remove obsolete field Name from debian/upstream/metadata (already present in
+ machine-readable debian/copyright).
+ * Use -fcommon option to tolerate "multiple definition of"
+
+ -- Andreas Tille <tille at debian.org> Fri, 30 Oct 2020 22:53:04 +0100
+
soapdenovo (1.05-5) unstable; urgency=medium
* Team upload
@@ -41,7 +57,7 @@ soapdenovo (1.05-3) unstable; urgency=medium
soapdenovo (1.05-2) unstable; urgency=low
* soapdenovo is not maintained anymore, please use
- soapdenovo2 (Closes: #732281).
+ soapdenovo2 (Closes: #732281).
-- Olivier Sallou <osallou at debian.org> Wed, 18 Dec 2013 12:32:59 +0100
=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11
=====================================
debian/control
=====================================
@@ -3,12 +3,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Olivier Sallou <osallou at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper (>= 11~),
+Build-Depends: debhelper-compat (= 13),
rename
-Standards-Version: 4.1.4
+Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/soapdenovo
Vcs-Git: https://salsa.debian.org/med-team/soapdenovo.git
Homepage: http://soap.genomics.org.cn/soapdenovo.html
+Rules-Requires-Root: no
Package: soapdenovo
Architecture: any-amd64 any-ppc64 any-ia64
=====================================
debian/copyright
=====================================
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: soapdenovo
Source: http://soap.genomics.org.cn/soapdenovo.html
=====================================
debian/patches/add_debug_symbols.patch
=====================================
@@ -7,8 +7,9 @@ Description: Add debug symbols
+++ b/src/127mer/Makefile
@@ -1,6 +1,6 @@
CC= gcc
- CFLAGS= -O3 -fomit-frame-pointer
+-CFLAGS= -O3 -fomit-frame-pointer
-DFLAGS=
++CFLAGS+= -O3 -fomit-frame-pointer
+DFLAGS= -g
OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \
concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \
@@ -17,8 +18,9 @@ Description: Add debug symbols
+++ b/src/31mer/Makefile
@@ -1,6 +1,6 @@
CC= gcc
- CFLAGS= -O3 -fomit-frame-pointer
+-CFLAGS= -O3 -fomit-frame-pointer
-DFLAGS=
++CFLAGS+= -O3 -fomit-frame-pointer
+DFLAGS= -g
OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \
concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \
@@ -27,8 +29,9 @@ Description: Add debug symbols
+++ b/src/63mer/Makefile
@@ -1,6 +1,6 @@
CC= gcc
- CFLAGS= -O3 -fomit-frame-pointer
+-CFLAGS= -O3 -fomit-frame-pointer
-DFLAGS=
++CFLAGS+= -O3 -fomit-frame-pointer
+DFLAGS= -g
OBJS= arc.o attachPEinfo.o bubble.o check.o compactEdge.o \
concatenateEdge.o connect.o contig.o cutTipPreGraph.o cutTip_graph.o \
=====================================
debian/rules
=====================================
@@ -5,9 +5,12 @@
#export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+# FIXME: This is discouraged ... but works for the moment to solve bug #957194
+# https://wiki.gentoo.org/wiki/Gcc_10_porting_notes/fno_common#The_-fcommon_workaround_.28discouraged.29
+export DEB_CFLAGS_MAINT_APPEND=-fcommon
%:
- dh $@
+ dh $@
override_dh_install:
dh_install
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,3 @@
-Name: SOAPdenovo
Reference:
Author: >
Ruiqiang Li and Hongmei Zhu and Jue Ruan and Wubin Qian and Xiaodong
View it on GitLab: https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a
--
View it on GitLab: https://salsa.debian.org/med-team/soapdenovo/-/compare/bc6683f5613ae7017c17d458dc6a28a414f4981d...2016bd7682dabf1d07a7eba43eb9146fac47665a
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