[med-svn] [Git][med-team/picard-tools][master] 7 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / picard-tools


Commits:
52c1b86d by Andreas Tille at 2020-09-10T17:10:04+02:00
routine-update: New upstream version

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01c5415a by Andreas Tille at 2020-09-10T17:10:08+02:00
New upstream version 2.23.4+dfsg
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81687235 by Andreas Tille at 2020-09-10T17:11:04+02:00
Update upstream source from tag 'upstream/2.23.4+dfsg'

Update to upstream version '2.23.4+dfsg'
with Debian dir 78f32fb37a4b4088cee49c1b6ce9e0e54c3f745a
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37150e78 by Andreas Tille at 2020-09-10T17:11:18+02:00
Remove unnecessary Team Upload line in changelog.

Changes-By: lintian-brush

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66443f6c by Andreas Tille at 2020-09-10T17:41:05+02:00
Remove redundant debian/gbp.conf

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83a4164f by Andreas Tille at 2020-09-10T17:42:39+02:00
Help lintian to spot correct doc-base file

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584de874 by Andreas Tille at 2020-09-10T17:59:33+02:00
Upload to unstable

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30 changed files:

- debian/changelog
- − debian/gbp.conf
- debian/libpicard-java-doc.javadoc
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
- src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectInsertSizeMetrics.java
- src/main/java/picard/analysis/CollectMultipleMetrics.java
- src/main/java/picard/analysis/WgsMetrics.java
- src/main/java/picard/analysis/artifacts/CollectSequencingArtifactMetrics.java
- src/main/java/picard/fingerprint/CheckFingerprint.java
- src/main/java/picard/fingerprint/CrosscheckFingerprints.java
- src/main/java/picard/fingerprint/ExtractFingerprint.java
- src/main/java/picard/fingerprint/FingerprintChecker.java
- src/main/java/picard/metrics/MultiLevelCollector.java
- src/main/java/picard/sam/AbstractAlignmentMerger.java
- src/main/java/picard/sam/MergeBamAlignment.java
- src/main/java/picard/util/IntervalListToBed.java
- src/main/java/picard/vcf/VcfToIntervalList.java
- + src/main/resources/picard/analysis/readLengthDistribution.R
- src/test/java/picard/analysis/CollectAlignmentSummaryMetricsTest.java
- src/test/java/picard/analysis/CollectMultipleMetricsTest.java
- src/test/java/picard/analysis/CollectOxoGMetricsTest.java
- src/test/java/picard/analysis/CollectWgsMetricsTest.java
- src/test/java/picard/analysis/MultiLevelCollectorTest.java
- src/test/java/picard/analysis/artifacts/ConvertSequencingArtifactToOxoGTest.java
- src/test/java/picard/cmdline/CommandLineProgramTest.java
- src/test/java/picard/fingerprint/FingerprintCheckerTest.java
- + src/test/java/picard/fingerprint/LiftOverHaplotypeMapTest.java
- src/test/java/picard/sam/AbstractAlignmentMergerTest.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/d339c2a82aeaf7a857a8b77acdddbbbf3dbe224d...584de87451794beb421d28b4b5efb2e3e11b1798

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View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/d339c2a82aeaf7a857a8b77acdddbbbf3dbe224d...584de87451794beb421d28b4b5efb2e3e11b1798
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