[med-svn] [Git][med-team/htsjdk][master] 11 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / htsjdk


Commits:
b7da9452 by Andreas Tille at 2020-09-10T17:20:43+02:00
routine-update: New upstream version

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e952f378 by Andreas Tille at 2020-09-10T17:20:46+02:00
New upstream version 2.23.0+dfsg
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27d83eb5 by Andreas Tille at 2020-09-10T17:22:00+02:00
Update upstream source from tag 'upstream/2.23.0+dfsg'

Update to upstream version '2.23.0+dfsg'
with Debian dir 3b536f1ee39e136a9a45545234092f409b623caf
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fddf7667 by Andreas Tille at 2020-09-10T17:22:00+02:00
routine-update: Standards-Version: 4.5.0

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88972176 by Andreas Tille at 2020-09-10T17:22:00+02:00
routine-update: debhelper-compat 13

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054b0e8d by Andreas Tille at 2020-09-10T18:12:23+02:00
Update patches

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d4fbe91e by Andreas Tille at 2020-09-10T18:12:33+02:00
cme fix dpkg-control

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c5d66e7a by Andreas Tille at 2020-09-10T18:12:59+02:00
routine-update: Remove trailing whitespace in debian/changelog

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5b17c1e6 by Andreas Tille at 2020-09-10T18:13:00+02:00
routine-update: Add salsa-ci file

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fd88982d by Andreas Tille at 2020-09-10T18:13:00+02:00
routine-update: Rules-Requires-Root: no

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b67fc84e by Andreas Tille at 2020-09-10T18:13:08+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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25 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/patches/92-disable-testhttp.patch
- + debian/salsa-ci.yml
- + debian/upstream/metadata
- src/main/java/htsjdk/samtools/SAMReadGroupRecord.java
- src/main/java/htsjdk/samtools/seekablestream/SeekableStreamFactory.java
- src/main/java/htsjdk/samtools/util/AbstractRecordAndOffset.java
- src/main/java/htsjdk/samtools/util/EdgeReadIterator.java
- src/main/java/htsjdk/tribble/gff/Gff3BaseData.java
- src/main/java/htsjdk/tribble/gff/Gff3Codec.java
- + src/main/java/htsjdk/tribble/gff/Gff3Constants.java
- src/main/java/htsjdk/tribble/gff/Gff3Feature.java
- src/main/java/htsjdk/tribble/gff/Gff3FeatureImpl.java
- + src/main/java/htsjdk/tribble/gff/Gff3Writer.java
- src/main/java/htsjdk/tribble/gff/SequenceRegion.java
- src/test/java/htsjdk/samtools/BAMCigarOverflowTest.java
- src/test/java/htsjdk/samtools/seekablestream/SeekableStreamFactoryTest.java
- src/test/java/htsjdk/samtools/util/EdgeReadIteratorTest.java
- src/test/java/htsjdk/samtools/util/EdgingRecordAndOffsetTest.java
- src/test/java/htsjdk/tribble/gff/Gff3CodecTest.java
- src/test/java/htsjdk/tribble/gff/Gff3FeatureTest.java
- + src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java
- src/test/java/htsjdk/variant/vcf/VCFFileReaderTest.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/71f0af889e0298faf41a3a44facca6702ad58f33...b67fc84e28c2b3ba935cbe3e4ca2b737355ac38b

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View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/compare/71f0af889e0298faf41a3a44facca6702ad58f33...b67fc84e28c2b3ba935cbe3e4ca2b737355ac38b
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