[med-svn] [Git][med-team/htsjdk][upstream] New upstream version 2.23.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / htsjdk


Commits:
e952f378 by Andreas Tille at 2020-09-10T17:20:46+02:00
New upstream version 2.23.0+dfsg
- - - - -


19 changed files:

- src/main/java/htsjdk/samtools/SAMReadGroupRecord.java
- src/main/java/htsjdk/samtools/seekablestream/SeekableStreamFactory.java
- src/main/java/htsjdk/samtools/util/AbstractRecordAndOffset.java
- src/main/java/htsjdk/samtools/util/EdgeReadIterator.java
- src/main/java/htsjdk/tribble/gff/Gff3BaseData.java
- src/main/java/htsjdk/tribble/gff/Gff3Codec.java
- + src/main/java/htsjdk/tribble/gff/Gff3Constants.java
- src/main/java/htsjdk/tribble/gff/Gff3Feature.java
- src/main/java/htsjdk/tribble/gff/Gff3FeatureImpl.java
- + src/main/java/htsjdk/tribble/gff/Gff3Writer.java
- src/main/java/htsjdk/tribble/gff/SequenceRegion.java
- src/test/java/htsjdk/samtools/BAMCigarOverflowTest.java
- src/test/java/htsjdk/samtools/seekablestream/SeekableStreamFactoryTest.java
- src/test/java/htsjdk/samtools/util/EdgeReadIteratorTest.java
- src/test/java/htsjdk/samtools/util/EdgingRecordAndOffsetTest.java
- src/test/java/htsjdk/tribble/gff/Gff3CodecTest.java
- src/test/java/htsjdk/tribble/gff/Gff3FeatureTest.java
- + src/test/java/htsjdk/tribble/gff/Gff3WriterTest.java
- src/test/java/htsjdk/variant/vcf/VCFFileReaderTest.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/e952f378e8adb9707360313e3002f0159d965007

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View it on GitLab: https://salsa.debian.org/med-team/htsjdk/-/commit/e952f378e8adb9707360313e3002f0159d965007
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