[med-svn] [Git][med-team/kaptive][master] debian/patches/blastdb_4: Pass "-blastdb_version 4" to makeblastdb to work...

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / kaptive


Commits:
7505cc6b by Iain Lane at 2020-09-04T18:16:36+01:00
debian/patches/blastdb_4: Pass "-blastdb_version 4" to makeblastdb to work properly on 32 bit systems

Fixes autopkgtest failure, and possibly a runtime failure too

- - - - -


2 changed files:

- + debian/patches/blastdb_4
- + debian/patches/series


Changes:

=====================================
debian/patches/blastdb_4
=====================================
@@ -0,0 +1,14 @@
+Description: Pass "-blastdb_version 4" to makeblastdb to work properly on 32 bit systems
+Author: Iain Lane <laney at debian.org>
+
+--- kaptive-0.7.0.orig/kaptive.py
++++ kaptive-0.7.0/kaptive.py
+@@ -1797,7 +1797,7 @@ def makeblastdb(fasta):
+         gunzip.stdout.close()
+         _, err = makeblastdb_process.communicate()
+     else:  # plain text
+-        makeblastdb_command = ['makeblastdb', '-dbtype', 'nucl', '-in', fasta]
++        makeblastdb_command = ['makeblastdb', '-blastdb_version', '4', '-dbtype', 'nucl', '-in', fasta]
+         makeblastdb_process = subprocess.Popen(makeblastdb_command, stdout=subprocess.PIPE,
+                                                stderr=subprocess.PIPE)
+         _, err = makeblastdb_process.communicate()


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+blastdb_4



View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/commit/7505cc6b9d615269323acd6a88eb407a1f15b2a6

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View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/commit/7505cc6b9d615269323acd6a88eb407a1f15b2a6
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