[med-svn] [Git][med-team/kaptive][master] 2 commits: Use single threaded mode in autopkgtest to work around bug #970344

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / kaptive


Commits:
91392e72 by Andreas Tille at 2020-09-15T07:31:40+02:00
Use single threaded mode in autopkgtest to work around bug #970344

- - - - -
9016f994 by Andreas Tille at 2020-09-15T08:05:58+02:00
Upload to unstable

- - - - -


2 changed files:

- debian/changelog
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-kaptive (0.7.3-1) UNRELEASED; urgency=medium
+kaptive (0.7.3-1) unstable; urgency=medium
 
   [ Iain Lane ]
   * debian/patches/blastdb_4: Pass "-blastdb_version 4" to makeblastdb to work
@@ -12,8 +12,9 @@ kaptive (0.7.3-1) UNRELEASED; urgency=medium
   * Rules-Requires-Root: no (routine-update)
   * Install wrapper script created by debhelper
   * Override dh_missing to ignore egg-info
+  * Use single threaded mode in autopkgtest to work around bug #970344
 
- -- Andreas Tille <tille at debian.org>  Sun, 13 Sep 2020 07:09:12 +0200
+ -- Andreas Tille <tille at debian.org>  Tue, 15 Sep 2020 07:31:47 +0200
 
 kaptive (0.7.0-2) unstable; urgency=medium
 


=====================================
debian/tests/run-unit-test
=====================================
@@ -14,5 +14,6 @@ cd "${AUTOPKGTEST_TMP}"
 
 gunzip -r *
 
-set -x
-kaptive.py -a exact_match.fasta -k /usr/share/${pkg}/reference_database/Klebsiella_k_locus_primary_reference.gbk -o output/test
+echo "FIXME: Due to bug #970344 we are using single threaded mode (-t 1) here."
+kaptive.py -t 1 -a exact_match.fasta -k /usr/share/${pkg}/reference_database/Klebsiella_k_locus_primary_reference.gbk -o output/test
+echo "FIXME: Make sure to remove '-t 1' from the kaptive call once bug #970344 is fixed."



View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/compare/5244f37e31e5276803be7af791794b887fb17b84...9016f99454f81635cc160d916ce5d658cadaa7d8

-- 
View it on GitLab: https://salsa.debian.org/med-team/kaptive/-/compare/5244f37e31e5276803be7af791794b887fb17b84...9016f99454f81635cc160d916ce5d658cadaa7d8
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