[med-svn] [Git][med-team/beast2-mcmc][master] 11 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / beast2-mcmc


Commits:
48d9c004 by Andreas Tille at 2020-09-15T08:13:56+02:00
routine-update: New upstream version

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67ed24e8 by Andreas Tille at 2020-09-15T08:13:58+02:00
New upstream version 2.6.3+dfsg
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8061dc8b by Andreas Tille at 2020-09-15T08:14:21+02:00
Update upstream source from tag 'upstream/2.6.3+dfsg'

Update to upstream version '2.6.3+dfsg'
with Debian dir 4ec45e43cd1ef36bacd60f709dfc95bb829d1d15
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2d1c373b by Andreas Tille at 2020-09-15T08:14:21+02:00
routine-update: Standards-Version: 4.5.0

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907438bb by Andreas Tille at 2020-09-15T08:14:21+02:00
routine-update: debhelper-compat 13

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d3767138 by Andreas Tille at 2020-09-15T08:15:33+02:00
Refresh patches

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3a4a7463 by Andreas Tille at 2020-09-15T08:15:43+02:00
routine-update: autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g

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55297203 by Andreas Tille at 2020-09-15T08:15:44+02:00
routine-update: Add salsa-ci file

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23828050 by Andreas Tille at 2020-09-15T08:15:44+02:00
routine-update: Rules-Requires-Root: no

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8a868d2d by Andreas Tille at 2020-09-15T08:15:47+02:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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98151f7c by Andreas Tille at 2020-09-15T08:15:53+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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30 changed files:

- build.xml
- debian/changelog
- debian/control
- debian/patches/antlr-compatibility.patch
- debian/patches/fix_classpath_in_build_xml.patch
- debian/patches/remove_appbundler.patch
- debian/patches/remove_mac_only_code.patch
- + debian/salsa-ci.yml
- debian/tests/run-unit-test
- debian/upstream/metadata
- + examples/parameterised/README.md
- + examples/parameterised/RSV2.json
- + examples/parameterised/RSV2.xml
- examples/testUCLNclock.json
- release/Linux/bin/applauncher
- release/Linux/bin/beast
- release/Linux/bin/beauti
- release/Linux/bin/densitree
- release/Linux/bin/loganalyser
- release/Linux/bin/logcombiner
- release/Linux/bin/packagemanager
- release/Linux/bin/treeannotator
- release/Linux/jrebin/applauncher
- release/Linux/jrebin/beast
- release/Linux/jrebin/beauti
- release/Linux/jrebin/densitree
- release/Linux/jrebin/loganalyser
- release/Linux/jrebin/logcombiner
- release/Linux/jrebin/packagemanager
- release/Linux/jrebin/treeannotator


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/-/compare/97392fee1bee315ebb0466015948e9aa64ec7473...98151f7c6e58952310a65305316015b227ca4962

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View it on GitLab: https://salsa.debian.org/med-team/beast2-mcmc/-/compare/97392fee1bee315ebb0466015948e9aa64ec7473...98151f7c6e58952310a65305316015b227ca4962
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