[med-svn] [Git][med-team/ncbi-blastplus][master] 6 commits: Revert "Merge branch 'blastdbv4' into 'master'"

[Aaron M. Ucko]

Aaron M. Ucko pushed to branch master at Debian Med / ncbi-blastplus


Commits:
69a135e4 by Aaron M. Ucko at 2020-09-19T20:50:10-04:00
Revert "Merge branch 'blastdbv4' into 'master'"

Fixed on the C++ side in #969608.  This reverts commit
762364cedeed8cbf9ed6acc5d42e479ddcf72b48, reversing changes made to
e46881b79153db2f10891dbb81fef89844ba1ab8.

- - - - -
0afa5b01 by Aaron M. Ucko at 2020-09-19T20:57:21-04:00
New upstream version 2.10.1
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b30a72cc by Aaron M. Ucko at 2020-09-19T21:05:48-04:00
Merge tag 'upstream/2.10.1' into master (#970344).

Upstream version 2.10.1.  Among other changes, "fix tblastn mt issue".

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801247a1 by Aaron M. Ucko at 2020-09-19T21:32:42-04:00
debian/patches: Update existing patches for 2.10.1.

* {hurd_fixes,run_perl_directly}: Rebase.
* support_gcc10: Drop build-system portions, incorporated upstream as
  of this release.

- - - - -
e4a51877 by Aaron M. Ucko at 2020-09-19T21:32:42-04:00
debian/patches/fix_x86isms: New.

Conditionally stub out CCpuFeatures::InstructionSet::InstructionSet,
which compiles only on x86.

- - - - -
ee76404c by Aaron M. Ucko at 2020-09-19T21:32:42-04:00
Adjust default v5 map size even on 64-bit platforms (#969608).

debian/patches/tune_lmdb_defaults: Rename from tune_32bit_lmdb_defaults;
scale down somewhat even on 64-bit platforms to account for potential
use of qemu.

- - - - -


30 changed files:

- c++/compilers/unix/ICC.sh
- c++/compilers/vs2015/protoc.bat
- c++/compilers/vs2017/check.sh
- c++/compilers/vs2017/protoc.bat
- c++/compilers/xcode30_prj/copybin.sh
- c++/compilers/xcode30_prj/datatool.sh
- c++/compilers/xcode30_prj/protoc.sh
- c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp
- c++/include/algo/blast/api/version.hpp
- c++/include/algo/blast/blastinput/blast_args.hpp
- c++/include/algo/blast/blastinput/blast_input_aux.hpp
- c++/include/algo/blast/blastinput/cmdline_flags.hpp
- c++/include/algo/blast/blastinput/magicblast_args.hpp
- c++/include/algo/blast/core/blast_hits.h
- c++/include/algo/blast/core/blast_hspstream.h
- c++/include/algo/blast/core/blast_seqsrc.h
- c++/include/algo/blast/core/blast_traceback.h
- c++/include/algo/blast/igblast/igblast.hpp
- c++/include/algo/winmask/seq_masker_istat.hpp
- c++/include/cgi/cgi_exception.hpp
- c++/include/cgi/cgiapp.hpp
- c++/include/cgi/ncbicgi.hpp
- c++/include/cgi/user_agent.hpp
- c++/include/common/config/ncbiconf_msvc.h
- c++/include/common/config/ncbiconf_xcode.h
- c++/include/common/ncbi_build_ver.h.in
- c++/include/common/ncbi_export.h
- c++/include/common/ncbi_package_ver.h
- c++/include/common/ncbi_revision.h.in
- c++/include/common/ncbi_source_ver.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/762364cedeed8cbf9ed6acc5d42e479ddcf72b48...ee76404c4d259633150617ed1652e06c40217a8a

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View it on GitLab: https://salsa.debian.org/med-team/ncbi-blastplus/-/compare/762364cedeed8cbf9ed6acc5d42e479ddcf72b48...ee76404c4d259633150617ed1652e06c40217a8a
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