[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.2.4

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
74736a56 by Steffen Moeller at 2020-09-26T00:55:46+02:00
New upstream version 1.2.4
- - - - -


30 changed files:

- .github/ISSUE_TEMPLATE/bug_report.md
- .gitignore
- .travis.yml
- HISTORY.md
- README.md
- scripts/vm/Vagrantfile → Vagrantfile
- bcbio/bam/__init__.py
- bcbio/bam/fastq.py
- bcbio/chipseq/__init__.py
- bcbio/chipseq/atac.py
- bcbio/chipseq/peaks.py
- bcbio/cwl/create.py
- + bcbio/data/umis/qiaseq-upx-384-cb1.txt.gz
- + bcbio/data/umis/qiaseq-upx-384-transform.json
- + bcbio/data/umis/qiaseq-upx-96-cb1.txt.gz
- + bcbio/data/umis/qiaseq-upx-96-transform.json
- bcbio/distributed/ipythontasks.py
- bcbio/distributed/multitasks.py
- bcbio/heterogeneity/chromhacks.py
- bcbio/hla/optitype.py
- bcbio/install.py
- bcbio/ngsalign/bismark.py
- bcbio/ngsalign/bwa.py
- bcbio/ngsalign/star.py
- bcbio/pipeline/alignment.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/main.py
- bcbio/pipeline/qcsummary.py
- bcbio/pipeline/sample.py
- bcbio/qc/atac.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/74736a56004d953bcc8498226f6e1f9b00168bda

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