[med-svn] [Git][med-team/libgoby-java][master] 5 commits: Preparing to repack by removing some big test data files

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / libgoby-java


Commits:
7a81c385 by Pierre Gruet at 2021-08-18T10:31:12+02:00
Preparing to repack by removing some big test data files

- - - - -
687c05f7 by Pierre Gruet at 2021-08-18T10:33:39+02:00
New upstream version 3.3.1+dfsg2
- - - - -
b1b60e33 by Pierre Gruet at 2021-08-18T10:34:12+02:00
Update upstream source from tag 'upstream/3.3.1+dfsg2'

Update to upstream version '3.3.1+dfsg2'
with Debian dir 3fdb95782c9bba348a554ebe860f11f1ea053cd9
- - - - -
07c40dc2 by Pierre Gruet at 2021-08-18T11:13:40+02:00
Excluding some more tests needing the deleted data test files

Adding documentation in the header of the patch and in d/copyright.
The 5 tests that are now excluded were passing before.

- - - - -
038c7a41 by Pierre Gruet at 2021-08-18T14:25:36+02:00
Upload to NEW, targeting unstable

- - - - -


30 changed files:

- debian/changelog
- debian/copyright
- debian/patches/exclude_not_runnable_tests.patch
- − goby-distribution/data/annotations/methyl-cpgIsland-annotations.tsv
- − goby-distribution/data/annotations/methyl-ens-promoter-annotations.tsv
- − goby-distribution/data/biomart-mouse-exons-ensembl55-genes-NCBIM37.txt
- − goby-distribution/data/biomart-mouse-exons-ensembl57-genes-MM9.txt
- − goby-distribution/data/biomart-mouse-exons-ensembl57-genes-NCBIM37.txt
- − goby-distribution/data/biomart-mouse-transcript-exon-ensembl57-NCBIM37.txt
- − goby-distribution/data/biomart_dog_exon_ensembl57_genes_BROADD2.57.txt
- − goby-distribution/data/biomart_human_exon_esmbl52genes_NCBI36.txt
- − goby-distribution/data/biomart_human_exon_esmbl57genes_NCBI_GRCh37.txt
- − goby-distribution/data/biomart_human_gene_exon_ensembl54_NCBI_GRCh36.txt
- − goby-distribution/data/biomart_human_gene_transcript_ensembl57_NCBI_CRCh37.txt
- − goby-distribution/data/biomart_human_transcript-exon_ensembl54_NCBI36.txt
- − goby-distribution/data/biomart_human_transcript_ensembl52_NCBI36.txt
- − goby-distribution/data/gene-transcript-annotations.txt
- − goby-distribution/data/reads/goby-mouse-reads-sample.compact-reads
- − goby-distribution/data/reads/goby-mouse-reads-sample.fasta.gz
- − goby-distribution/data/reads/test-cases-variations.fasta
- − goby-distribution/data/reference/mm9/README.txt
- − goby-distribution/data/reference/mm9/chr1.compact-reads
- − goby-distribution/data/reference/mm9/chr1.fa.gz
- − goby-distribution/data/reference/test-cases-variations/test-case-references.fasta
- − goby-distribution/data/snps/sample-mouse.tsv
- − models/genotyping/1495043324474/bestScore
- − models/genotyping/1495043324474/bestscore-ComputationGraph.bin
- − models/genotyping/1495043324474/bestscore-perf-log.tsv
- − models/genotyping/1495043324474/config.properties
- − models/genotyping/1495043324474/domain.properties


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/compare/02da56598e67eaca2ff3ac81c285670fc76d12ad...038c7a4189fe409fb2b6e32b60aa0bb91b91eed1

-- 
View it on GitLab: https://salsa.debian.org/med-team/libgoby-java/-/compare/02da56598e67eaca2ff3ac81c285670fc76d12ad...038c7a4189fe409fb2b6e32b60aa0bb91b91eed1
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210818/623f13e3/attachment.htm>