[med-svn] [Git][med-team/hyphy][master] 5 commits: New upstream version 2.5.32+dfsg

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / hyphy


Commits:
d482898d by Nilesh Patra at 2021-08-25T19:32:00+05:30
New upstream version 2.5.32+dfsg
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3aee5582 by Nilesh Patra at 2021-08-25T19:32:10+05:30
Update upstream source from tag 'upstream/2.5.32+dfsg'

Update to upstream version '2.5.32+dfsg'
with Debian dir e1d1b5982fb24400192305a719416748350afdd4
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d46aa368 by Nilesh Patra at 2021-08-25T19:38:52+05:30
Refresh d/p/use_debian_sqlite.patch, do not impose ZLIB changes on the same patch so as to avoid confusion

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0be77009 by Nilesh Patra at 2021-08-25T19:44:06+05:30
d/p/set-zlib-after-setting-default-libs.patch: Check for existence of ZLIB *after* DEFAULT_LIBRARIES have been set

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56826e57 by Nilesh Patra at 2021-08-25T19:45:13+05:30
Upload to unstable

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30 changed files:

- CMakeLists.txt
- debian/changelog
- debian/patches/series
- + debian/patches/set-zlib-after-setting-default-libs.patch
- debian/patches/use_debian_sqlite.patch
- res/TemplateBatchFiles/AddABias.ibf
- + res/TemplateBatchFiles/DirectionalREL.bf
- res/TemplateBatchFiles/GARD.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/FADE.bf
- res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
- res/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
- res/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf
- res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/SLAC.bf
- res/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
- res/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/files.lst
- res/TemplateBatchFiles/libv3/UtilityFunctions.bf
- res/TemplateBatchFiles/libv3/all-terms.bf
- res/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- src/core/global_things.cpp
- src/core/include/likefunc.h
- src/core/likefunc.cpp
- src/core/matrix.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/5962906e7730ce0afd1374281cc747aa5d2d2790...56826e5714bca2b37ee3c510b06dcb0a387781fb

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/5962906e7730ce0afd1374281cc747aa5d2d2790...56826e5714bca2b37ee3c510b06dcb0a387781fb
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