[med-svn] [Git][med-team/spades][upstream] New upstream version 3.15.3+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / spades


Commits:
82063d64 by Andreas Tille at 2021-08-28T20:07:58+02:00
New upstream version 3.15.3+dfsg
- - - - -


30 changed files:

- README.md
- assembler/VERSION
- assembler/changelog.html
- assembler/configs/debruijn/config.info
- assembler/configs/debruijn/rna_mode.info
- − assembler/coronaspades.py
- + assembler/coronaspades.py
- assembler/ext/src/bamtools/api/internal/io/pbgzf/util.c
- assembler/manual.html
- assembler/spades.py
- assembler/src/cmake/pack.cmake
- assembler/src/common/assembly_graph/dijkstra/dijkstra_helper.hpp
- assembler/src/common/assembly_graph/dijkstra/neighbours_iterator.hpp
- assembler/src/common/assembly_graph/paths/mapping_path.hpp
- assembler/src/common/io/dataset_support/dataset_readers.cpp
- assembler/src/common/io/dataset_support/dataset_readers.hpp
- assembler/src/common/io/dataset_support/read_converter.cpp
- assembler/src/common/io/reads/io_helper.cpp
- assembler/src/common/io/reads/io_helper.hpp
- assembler/src/common/io/reads/osequencestream.hpp
- assembler/src/common/math/xmath.h
- assembler/src/common/modules/alignment/long_read_mapper.cpp
- assembler/src/common/modules/alignment/pacbio/pac_index.hpp
- assembler/src/common/modules/chromosome_remover.cpp
- assembler/src/common/modules/path_extend/paired_library.hpp
- assembler/src/common/modules/path_extend/pipeline/extenders_logic.cpp
- assembler/src/common/modules/path_extend/pipeline/launcher.cpp
- assembler/src/common/paired_info/pair_info_filters.hpp
- assembler/src/common/pipeline/config_struct.cpp
- assembler/src/common/pipeline/config_struct.hpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/82063d64599b06757f5c74a52a18eb907b7e77bd

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View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/82063d64599b06757f5c74a52a18eb907b7e77bd
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