[med-svn] [Git][med-team/picard-tools][master] 20 commits: Information in d/README.source is outdated

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / picard-tools


Commits:
eb31452f by Pierre Gruet at 2021-11-17T21:39:31+01:00
Information in d/README.source is outdated

- - - - -
02c98cce by Pierre Gruet at 2021-11-17T21:47:04+01:00
New upstream version 2.26.5+dfsg
- - - - -
afcf32d0 by Pierre Gruet at 2021-11-17T21:48:03+01:00
Update upstream source from tag 'upstream/2.26.5+dfsg'

Update to upstream version '2.26.5+dfsg'
with Debian dir c0fa7746651ca432d796ca12ed769a0c80b814da
- - - - -
6380e91c by Pierre Gruet at 2021-11-17T21:58:43+01:00
Refreshing d/copyright

- - - - -
07614d9e by Pierre Gruet at 2021-11-17T22:21:18+01:00
Refreshing patches

- - - - -
7eb3d8e3 by Pierre Gruet at 2021-11-23T22:12:33+01:00
Using my debian.org email address

- - - - -
4d1423c5 by Pierre Gruet at 2021-11-27T20:49:43+01:00
Setting properly the classpath in the .manifest file, no jar list in PicardCommandLine

- - - - -
604a2394 by Pierre Gruet at 2021-11-27T20:49:56+01:00
Updating the list of dependencies

- - - - -
8ccc72ec by Pierre Gruet at 2021-11-27T20:50:33+01:00
Correcting a type error in a test concerning Illumina data provider

- - - - -
f53741c0 by Pierre Gruet at 2021-11-27T20:50:54+01:00
Adding a Lintian override for the embedded javascript

- - - - -
358bbd06 by Pierre Gruet at 2021-11-27T20:51:34+01:00
Adding a dependency of the doc package in libjs-jquery

- - - - -
5d7526bd by Pierre Gruet at 2021-11-27T20:52:19+01:00
Adding myself as uploader

- - - - -
749155db by Pierre Gruet at 2021-11-27T20:53:44+01:00
Updating changelog

- - - - -
ad572e7e by Pierre Gruet at 2021-11-27T20:55:34+01:00
Merge branch 'master' of salsa.debian.org:med-team/picard-tools

- - - - -
35fe7b68 by Pierre Gruet at 2021-11-27T20:58:10+01:00
New upstream version 2.26.6+dfsg
- - - - -
40348821 by Pierre Gruet at 2021-11-27T20:59:20+01:00
Update upstream source from tag 'upstream/2.26.6+dfsg'

Update to upstream version '2.26.6+dfsg'
with Debian dir 2731bb2876fde27953f739d99c3e7a75252f5ae9
- - - - -
cd4efd32 by Pierre Gruet at 2021-11-27T21:02:50+01:00
Refreshing patches

- - - - -
bd539825 by Pierre Gruet at 2021-11-27T21:44:34+01:00
Raising Standards version to 4.6.0 (no change)

- - - - -
d2aeb3b5 by Pierre Gruet at 2021-11-27T21:47:16+01:00
Updating changelog

- - - - -
cce55ffb by Pierre Gruet at 2021-12-02T22:35:46+01:00
Upload to unstable

- - - - -


30 changed files:

- + .github/workflows/trivy.yml
- .travis.yml
- Dockerfile
- LICENSE.txt
- README.md
- build.gradle
- build_push_docker.sh
- − debian/README.source
- debian/bin/PicardCommandLine
- debian/changelog
- debian/control
- debian/copyright
- + debian/libpicard-java-doc.lintian-overrides
- − debian/libpicard-java.classpath
- debian/libpicard-java.manifest
- debian/patches/10-build.xml.patch
- debian/patches/20-shadowjar.patch
- debian/patches/30-tests-fix-dataprovider.patch
- debian/patches/40-tests-fix-testng.patch
- debian/patches/correct_dataprovider_TestDontMergeAbuttingData.patch
- debian/patches/fix_unreadabletests.patch
- + scripts/travis/check_for_pull_request
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
- src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
- src/main/java/picard/analysis/CollectGcBiasMetrics.java
- src/main/java/picard/analysis/CollectInsertSizeMetrics.java
- src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java
- src/main/java/picard/analysis/CollectOxoGMetrics.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/8fb8b99e49367ddae0505ff7287806f8ab92a4e9...cce55ffb44014102a84715981b8bd715d55cd4a6

-- 
View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/8fb8b99e49367ddae0505ff7287806f8ab92a4e9...cce55ffb44014102a84715981b8bd715d55cd4a6
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20211202/9d575c40/attachment.htm>