[med-svn] [Git][med-team/picard-tools][upstream] 2 commits: New upstream version 2.26.5+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch upstream at Debian Med / picard-tools


Commits:
02c98cce by Pierre Gruet at 2021-11-17T21:47:04+01:00
New upstream version 2.26.5+dfsg
- - - - -
35fe7b68 by Pierre Gruet at 2021-11-27T20:58:10+01:00
New upstream version 2.26.6+dfsg
- - - - -


30 changed files:

- + .github/workflows/trivy.yml
- .travis.yml
- Dockerfile
- LICENSE.txt
- README.md
- build.gradle
- build_push_docker.sh
- + scripts/travis/check_for_pull_request
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
- src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
- src/main/java/picard/analysis/CollectGcBiasMetrics.java
- src/main/java/picard/analysis/CollectInsertSizeMetrics.java
- src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java
- src/main/java/picard/analysis/CollectOxoGMetrics.java
- src/main/java/picard/analysis/CollectQualityYieldMetrics.java
- src/main/java/picard/analysis/CollectRnaSeqMetrics.java
- src/main/java/picard/analysis/CollectRrbsMetrics.java
- src/main/java/picard/analysis/CollectWgsMetrics.java
- src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
- src/main/java/picard/analysis/MeanQualityByCycle.java
- src/main/java/picard/analysis/QualityScoreDistribution.java
- src/main/java/picard/analysis/RnaSeqMetrics.java
- src/main/java/picard/analysis/SinglePassSamProgram.java
- src/main/java/picard/analysis/directed/CollectTargetedMetrics.java
- src/main/java/picard/analysis/directed/RnaSeqMetricsCollector.java
- src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java
- src/main/java/picard/annotation/RefFlatReader.java
- + src/main/java/picard/annotation/SortGff.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/83ec790bdd93a561288ad0fc1230b3773777ad85...35fe7b686c72df9c0e8e46f952bc58ac82a13f97

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View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/83ec790bdd93a561288ad0fc1230b3773777ad85...35fe7b686c72df9c0e8e46f952bc58ac82a13f97
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