[med-svn] [Git][med-team/andi][master] 3 commits: d/t/lowhomo.sh: Remove bashism, fix script

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / andi


Commits:
7cf3bda9 by Nilesh Patra at 2021-12-30T19:30:56+05:30
d/t/lowhomo.sh: Remove bashism, fix script

- - - - -
b1f50137 by Nilesh Patra at 2021-12-30T19:30:56+05:30
Add patch to remove comparision of different signed types in tests

- - - - -
91310694 by Nilesh Patra at 2021-12-30T19:34:12+05:30
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- + debian/patches/remove-signedcompare-warning.patch
- + debian/patches/series
- debian/tests/lowhomo.sh


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+andi (0.14-2) unstable; urgency=medium
+
+  * Team Upload.
+  * d/t/lowhomo.sh: Remove bashism, fix script
+  * Add patch to remove comparison of different
+    signed types in tests
+
+ -- Nilesh Patra <nilesh at debian.org>  Thu, 30 Dec 2021 19:31:14 +0530
+
 andi (0.14-1) unstable; urgency=medium
 
   * Team upload


=====================================
debian/patches/remove-signedcompare-warning.patch
=====================================
@@ -0,0 +1,11 @@
+--- a/test/test_fasta.cxx
++++ b/test/test_fasta.cxx
+@@ -57,7 +57,7 @@
+ 
+ 	auto base_seed = seed;
+ 
+-	for( int i=0; i< seqs.size(); i++){
++	for( auto i=0u; i< seqs.size(); i++){
+ 		cout << ">S" << i << " (base_seed: " << base_seed << ")" << endl;
+ 		print_seq( base_seed, seed++, length, line_length, seqs[i]);
+ 	}


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+remove-signedcompare-warning.patch


=====================================
debian/tests/lowhomo.sh
=====================================
@@ -45,7 +45,7 @@ cat both_low.fa b_low.fa | awk -v RS='>' '{if($1 == "S1")print ">"$0 > "S1_low.f
 andi -j S0_low.fa S1_low.fa 2>&1 | grep 'homology'
 EXIT_VAL=$?
 
-if [[ EXIT_VAL -ge 1 ]]; then
+if [ ${EXIT_VAL} -ge 1 ]; then
 	echo "Triggering low homology failed" >&2
 	grep '^>' a_low.fa b_low.fa both_low.fa
 fi



View it on GitLab: https://salsa.debian.org/med-team/andi/-/compare/c8bd96b4f523f551c4469532899894c3e3396d53...913106946eb1703508ebd3d453334c8362af0e7a

-- 
View it on GitLab: https://salsa.debian.org/med-team/andi/-/compare/c8bd96b4f523f551c4469532899894c3e3396d53...913106946eb1703508ebd3d453334c8362af0e7a
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