[med-svn] [Git][med-team/gubbins][master] 6 commits: routine-update: New upstream version

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / gubbins


Commits:
0a2f18e5 by Andreas Tille at 2021-02-04T22:57:47+01:00
routine-update: New upstream version

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8fa78ea3 by Andreas Tille at 2021-02-04T22:57:48+01:00
New upstream version 3.0.0
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ff2e7eaf by Andreas Tille at 2021-02-04T22:57:59+01:00
Update upstream source from tag 'upstream/3.0.0'

Update to upstream version '3.0.0'
with Debian dir f706e6a04ae34ab6da788e2df77b4444a7a97b55
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a36bf520 by Andreas Tille at 2021-02-04T22:58:00+01:00
routine-update: Standards-Version: 4.5.1

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424a7e44 by Andreas Tille at 2021-02-04T23:25:08+01:00
Update patches

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81e114fa by Andreas Tille at 2021-02-04T23:36:19+01:00
Build-Depends: python3-scipy <!nocheck>, python3-multiprocess <!nocheck>, python3-wheel <!nocheck>

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29 changed files:

- + .github/workflows/build.yml
- − .travis.yml
- CHANGELOG.md
- Dockerfile
- README.md
- VERSION
- configure.ac
- debian/changelog
- debian/control
- debian/patches/gubbins_exe_in_usr_lib.patch
- debian/patches/series
- − debian/patches/spelling-error-in-binary.patch
- + environment.yml
- install_dependencies.sh
- − obsolete_changelog
- python/Makefile.am
- + python/VERSION
- python/gubbins/ValidateFastaAlignment.py
- python/gubbins/__init__.py
- python/gubbins/common.py
- + python/gubbins/pyjar.py
- + python/gubbins/run_gubbins.py
- + python/gubbins/tests/data/bootstrapping_test.aln
- python/gubbins/tests/data/non_bi_tree.tre.expected
- python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2 → python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2_expected
- python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4 → python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_expected
- python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_tree_at_midpoint_expected
- python/gubbins/tests/test_dependencies.py
- python/gubbins/tests/test_pre_process_fasta.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/eee5e03da77d72967bac8c35e4897c04c894454d...81e114faeb15f35b3465e4feb1bff49ca85085ee

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View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/eee5e03da77d72967bac8c35e4897c04c894454d...81e114faeb15f35b3465e4feb1bff49ca85085ee
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