[med-svn] [Git][med-team/bcbio][master] 3 commits: New upstream version 1.2.6

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
5c8848ab by Steffen Moeller at 2021-02-10T16:24:07+01:00
New upstream version 1.2.6
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a4e8977a by Steffen Moeller at 2021-02-10T16:25:03+01:00
Update upstream source from tag 'upstream/1.2.6'

Update to upstream version '1.2.6'
with Debian dir 302e32dd03f2c29d4ea15076af5ae9170dc10e54
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68261fcd by Steffen Moeller at 2021-02-10T18:29:23+01:00
Upstream accepted patch, added dep on libhts-dev

The .so is attempted to be loaded.

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30 changed files:

- HISTORY.md
- MANIFEST.in
- README.md
- bcbio/dragen/dragen.py
- bcbio/pipeline/main.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/provenance/programs.py
- bcbio/variation/annotation.py
- bcbio/variation/vardict.py
- config/examples/rnaseq-seqc-getdata.sh
- config/examples/rnaseq-seqc.yaml
- config/examples/seqc.csv
- config/genomes/GRCh37-resources.yaml
- config/genomes/hg19-resources.yaml
- config/genomes/hg38-resources.yaml
- + config/templates/purecn_ton.yaml
- config/vcfanno/GRCh37-gemini.conf
- config/vcfanno/hg38-gemini.conf
- config/vcfanno/somatic.conf
- debian/changelog
- debian/control
- − debian/patches/include_tests
- debian/patches/series
- docs/contents/bulk_rnaseq.md
- docs/contents/configuration.md
- docs/contents/installation.md
- docs/contents/purecn.md
- requirements-conda.txt
- requirements.txt


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/bbe5fb17531f381785724476861b81cf9d2eba99...68261fcdb35b8f5d078023944114bc5b465cb884

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/bbe5fb17531f381785724476861b81cf9d2eba99...68261fcdb35b8f5d078023944114bc5b465cb884
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