Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
697a3c6d by Andreas Tille at 2021-02-11T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,87 +1,83 @@
-Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
+Last-Update: Thu, 11 Feb 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging,covid-19} |
- orthanc | 99 | {practice,imaging,covid-19} |
- orthanc-wsi | 50 | {laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 34 | {imaging} |
- dicom3tools | 34 | {imaging} |
- gdcm | 30 | {imaging-dev} |
+ dcmtk | 178 | {imaging,covid-19} |
+ orthanc | 98 | {practice,imaging,covid-19} |
+ orthanc-wsi | 49 | {laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 35 | {imaging} |
+ dicom3tools | 33 | {imaging} |
+ gdcm | 29 | {imaging-dev} |
htsjdk | 25 | {bio-dev} |
dicomscope | 24 | {imaging} |
- gdcm | 21 | {imaging,covid-19} |
dcm2niix | 20 | {imaging} |
+ gdcm | 20 | {imaging,covid-19} |
+ odin | 19 | {imaging,imaging-dev} |
nifticlib | 18 | {imaging} |
- odin | 18 | {imaging,imaging-dev} |
dicomnifti | 16 | {imaging} |
- gnumed-server | 15 | {covid-19,practice} |
minc-tools | 15 | {imaging} |
- plastimatch | 14 | {imaging} |
+ gnumed-server | 14 | {covid-19,practice} |
+ plastimatch | 13 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
pixelmed | 12 | {imaging} |
adun.app | 11 | {bio} |
- gdcm | 11 | {imaging-dev} |
king | 11 | {imaging,typesetting} |
- ngs-sdk | 11 | {bio-dev} |
openslide | 11 | {imaging} |
+ gdcm | 10 | {imaging-dev} |
insighttoolkit4 | 10 | {imaging-dev} |
invesalius | 10 | {imaging} |
nifti2dicom | 10 | {imaging} |
- jebl2 | 9 | {bio-dev} |
- vtk-dicom | 9 | {imaging} |
- biojava-live | 8 | {bio-dev} |
ea-utils | 8 | {bio} |
- mia | 8 | {imaging} |
- mipe | 8 | {bio,cloud} |
- ngs-sdk | 8 | {bio-dev} |
+ jebl2 | 8 | {bio-dev} |
orthanc-webviewer | 8 | {imaging} |
+ vtk-dicom | 8 | {imaging} |
+ biojava-live | 7 | {bio-dev} |
biomaj3-cli | 7 | {cloud} |
fastlink | 7 | {bio,cloud} |
jellyfish1 | 7 | {bio} |
- lagan | 7 | {bio} |
- libncl | 7 | {bio} |
librg-utils-perl | 7 | {bio} |
- mauve-aligner | 7 | {bio} |
melting | 7 | {bio,cloud} |
+ mia | 7 | {imaging} |
+ mipe | 7 | {bio,cloud} |
multiqc | 7 | {covid-19,bio} |
- obitools | 7 | {bio} |
+ ngs-sdk | 7 | {bio-dev} |
prime-phylo | 7 | {bio,cloud} |
- pymia | 7 | {imaging-dev} |
- tracetuner | 7 | {bio} |
+ staden | 7 | {bio} |
beast-mcmc | 6 | {bio-phylogeny,bio} |
- bio-tradis | 6 | {bio,bio-dev} |
- bitseq | 6 | {bio} |
- ecopcr | 6 | {bio} |
- embassy-domainatrix | 6 | {bio,cloud} |
embassy-domsearch | 6 | {cloud,bio} |
- estscan | 6 | {bio} |
- ghmm | 6 | {bio} |
+ lagan | 6 | {bio} |
lamarc | 6 | {bio} |
- libsbml | 6 | {bio-dev} |
+ libncl | 6 | {bio} |
+ mauve-aligner | 6 | {bio} |
+ obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
- perm | 6 | {cloud,bio} |
- phast | 6 | {bio} |
+ pymia | 6 | {imaging-dev} |
runcircos-gui | 6 | {bio} |
saint | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
- staden | 6 | {bio} |
+ tracetuner | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ bitseq | 5 | {bio} |
brig | 5 | {bio} |
busco | 5 | {covid-19,bio} |
- clonalorigin | 5 | {bio} |
cufflinks | 5 | {cloud,bio} |
+ ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ estscan | 5 | {bio} |
libpal-java | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ libsbml | 5 | {bio-dev} |
+ perm | 5 | {cloud,bio} |
+ phast | 5 | {bio} |
piler | 5 | {bio} |
prottest | 5 | {bio,bio-phylogeny} |
pscan-chip | 5 | {bio} |
- qcumber | 5 | {bio} |
quorum | 5 | {bio} |
rambo-k | 5 | {bio} |
- rdp-alignment | 5 | {bio} |
rdp-classifier | 5 | {bio} |
salmid | 5 | {bio} |
salmon | 5 | {covid-19,bio} |
@@ -90,12 +86,13 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
assemblytics | 4 | {bio} |
bamkit | 4 | {covid-19,bio} |
canu | 4 | {bio} |
+ clonalorigin | 4 | {bio} |
dicompyler | 4 | {oncology} |
embassy-domalign | 4 | {cloud,bio} |
fastml | 4 | {bio} |
+ ghmm | 4 | {bio} |
hinge | 4 | {bio} |
jmodeltest | 4 | {bio,bio-phylogeny} |
- libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
mhap | 4 | {bio,bio-ngs} |
microbegps | 4 | {bio} |
@@ -105,14 +102,13 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
paraclu | 4 | {bio,cloud} |
phyutility | 4 | {bio,cloud} |
proalign | 4 | {bio,bio-phylogeny} |
+ qcumber | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
rtax | 4 | {bio,cloud} |
sibsim4 | 4 | {cloud,bio} |
sight | 4 | {imaging} |
soapsnp | 4 | {bio} |
- stacks | 4 | {bio} |
suitename | 4 | {bio} |
- surankco | 4 | {bio} |
- tvc | 4 | {bio} |
yaha | 4 | {bio} |
blasr | 3 | {bio,bio-ngs} |
cat-bat | 3 | {covid-19,bio} |
@@ -121,6 +117,7 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
fsm-lite | 3 | {bio} |
getdata | 3 | {bio} |
ipig | 3 | {bio} |
+ libdivsufsort | 3 | {bio-dev} |
logol | 3 | {bio} |
pbdagcon | 3 | {bio} |
placnet | 3 | {bio} |
@@ -130,70 +127,52 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
+ stacks | 3 | {bio} |
+ surankco | 3 | {bio} |
+ tvc | 3 | {bio} |
zalign | 3 | {cloud,bio} |
atropos | 2 | {bio} |
blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
emmax | 2 | {bio} |
gatb-core | 2 | {bio} |
- libmuscle | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
nifticlib | 2 | {imaging-dev} |
openslide | 2 | {imaging-dev} |
oscar | 2 | {data,tools,practice} |
- python-bcbio-gff | 2 | {bio-dev} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
spaln | 2 | {bio,covid-19} |
- srf | 2 | {bio-dev} |
tophat-recondition | 2 | {covid-19,bio} |
trace2dbest | 2 | {bio} |
varscan | 2 | {covid-19,bio} |
yanagiba | 2 | {covid-19,bio} |
- bambamc | 1 | {bio-dev} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {bio,covid-19} |
- gatb-core | 1 | {bio-dev} |
gifticlib | 1 | {imaging-dev} |
kmerresistance | 1 | {bio} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
- libbpp-core | 1 | {bio-dev} |
- libbpp-phyl | 1 | {bio-dev} |
- libbpp-phyl-omics | 1 | {bio-dev} |
- libbpp-popgen | 1 | {bio-dev} |
- libbpp-raa | 1 | {bio-dev} |
- libbpp-seq | 1 | {bio-dev} |
- libbpp-seq-omics | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
- libdisorder | 1 | {bio-dev} |
- libgenome | 1 | {bio-dev} |
- libgkarrays | 1 | {bio-dev} |
- libhmsbeagle | 1 | {bio-dev} |
- libmems | 1 | {bio-dev} |
- libncl | 1 | {bio-dev} |
- libqes | 1 | {bio-dev} |
- libseqlib | 1 | {bio-dev} |
- libstatgen | 1 | {bio-dev} |
+ libmuscle | 1 | {bio-dev} |
nanosv | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- parallel-fastq-dump | 1 | {covid-19} |
- pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
+ python-bcbio-gff | 1 | {bio-dev} |
sambamba | 1 | {bio} |
seq-gen | 1 | {bio} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
+ srf | 1 | {bio-dev} |
svim | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
varna | 1 | {bio} |
acedb | 0 | {cloud,bio} |
+ bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
@@ -202,16 +181,35 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
intake | 0 | {bio-dev,bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
+ libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
+ libbpp-core | 0 | {bio-dev} |
+ libbpp-phyl | 0 | {bio-dev} |
+ libbpp-phyl-omics | 0 | {bio-dev} |
+ libbpp-popgen | 0 | {bio-dev} |
+ libbpp-raa | 0 | {bio-dev} |
+ libbpp-seq | 0 | {bio-dev} |
+ libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
+ libdisorder | 0 | {bio-dev} |
+ libgenome | 0 | {bio-dev} |
+ libgkarrays | 0 | {bio-dev} |
+ libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
+ libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
+ libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
+ libqes | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
libvistaio | 0 | {imaging-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
@@ -222,6 +220,7 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
@@ -241,5 +240,5 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
-(271 rows)
+(270 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/697a3c6dc917cbbe3dbff46b7581c56ae7ce90ad
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/697a3c6dc917cbbe3dbff46b7581c56ae7ce90ad
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