[med-svn] [Git][med-team/metastudent-data][master] 3 commits: Deactivate patch from previous upload since it creates architecture-dependent data files

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / metastudent-data


Commits:
a357d656 by Andreas Tille at 2021-02-16T09:08:44+01:00
Deactivate patch from previous upload since it creates architecture-dependent data files

- - - - -
c2723bb3 by Andreas Tille at 2021-02-16T09:15:23+01:00
Enforce BLASTDB version 4 format

- - - - -
4f22b8d9 by Andreas Tille at 2021-02-16T09:20:41+01:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/patches/permit_blastdb5_data_files.patch
- debian/patches/series
- + debian/patches/use_blastdb_format_4.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+metastudent-data (2.0.1-7) unstable; urgency=medium
+
+  * Team upload
+  * Deactivate patch from previous upload since it creates
+    architecture-dependent data files (see
+    https://lists.debian.org/debian-med/2021/02/msg00097.html)
+  * Enforce BLASTDB version 4 format
+
+ -- Andreas Tille <tille at debian.org>  Tue, 16 Feb 2021 09:15:30 +0100
+
 metastudent-data (2.0.1-6) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/permit_blastdb5_data_files.patch
=====================================
@@ -1,3 +1,5 @@
+Attention: This patch is deactivated since BLASTDB version 5 format is not architecture independent
+  See https://lists.debian.org/debian-med/2021/02/msg00097.html
 Description: Enable BLASTDB version 5 format
 Bug-Debian: https://bugs.debian.org/981293
 Author: Andreas Tille <tille at debian.org>


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 01_formatdb_fix_prot_dbtype.patch
-permit_blastdb5_data_files.patch
+# permit_blastdb5_data_files.patch # see comment in patch
+use_blastdb_format_4.patch


=====================================
debian/patches/use_blastdb_format_4.patch
=====================================
@@ -0,0 +1,19 @@
+Description: Enforce BLASTDB version 4 format
+  see https://lists.debian.org/debian-med/2021/02/msg00052.html
+      (second of the suggested options)
+  and https://lists.debian.org/debian-med/2021/02/msg00097.html
+Bug-Debian: https://bugs.debian.org/981293
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 16 Feb 2021 09:07:36 +0100
+
+--- a/Makefile.am
++++ b/Makefile.am
+@@ -21,7 +21,7 @@ install-data-local:
+ # BLAST databases are architecture dependent and have to be installed in pkgdatadir
+ $(BLASTDB) : %.fasta.psq : $(srcdir)/%.fasta
+ 	mkdir -p $(dir $@) && \
+-		formatdb -p T -i "$<" -n "$(@:.psq=)" && rm -f formatdb.log
++		makeblastdb -dbtype prot -in "$<" -out "$(@:.psq=)" -blastdb_version 4
+ 
+ dist-hook:
+ 	find "$(distdir)" -name .svn -o -name '*.phr' -o -name '*.pin' -o -name '*.psq' | xargs rm -rf --



View it on GitLab: https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324

-- 
View it on GitLab: https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324
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