Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
12e60e42 by Andreas Tille at 2021-02-16T13:42:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,33 +1,34 @@
-Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
+Last-Update: Tue, 16 Feb 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging,covid-19} |
- orthanc | 100 | {practice,imaging,covid-19} |
- orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} |
- amide | 38 | {imaging} |
- dicom3tools | 35 | {imaging} |
- gdcm | 32 | {imaging-dev} |
- dicomscope | 28 | {imaging} |
- gdcm | 23 | {imaging,covid-19} |
- dcm2niix | 21 | {imaging} |
- htsjdk | 21 | {bio-dev} |
- dicomnifti | 19 | {imaging} |
- odin | 19 | {imaging,imaging-dev} |
- nifticlib | 18 | {imaging} |
- minc-tools | 15 | {imaging} |
- plastimatch | 15 | {imaging} |
+ dcmtk | 179 | {imaging,covid-19} |
+ orthanc | 98 | {practice,imaging,covid-19} |
+ orthanc-wsi | 51 | {laboratory,practice,his,oncology,covid-19,imaging} |
+ amide | 39 | {imaging} |
+ dicom3tools | 36 | {imaging} |
+ gdcm | 36 | {imaging-dev} |
+ dicomscope | 29 | {imaging} |
+ gdcm | 24 | {imaging,covid-19} |
+ dcm2niix | 22 | {imaging} |
+ htsjdk | 22 | {bio-dev} |
+ dicomnifti | 20 | {imaging} |
+ odin | 20 | {imaging,imaging-dev} |
+ nifticlib | 19 | {imaging} |
+ minc-tools | 16 | {imaging} |
+ plastimatch | 16 | {imaging} |
+ invesalius | 15 | {imaging} |
gnumed-server | 14 | {covid-19,practice} |
- invesalius | 14 | {imaging} |
- king | 13 | {imaging,typesetting} |
+ king | 14 | {imaging,typesetting} |
+ openslide | 13 | {imaging} |
pixelmed | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
- openslide | 12 | {imaging} |
+ adun.app | 11 | {bio} |
ngs-sdk | 11 | {bio-dev} |
nifti2dicom | 11 | {imaging} |
- adun.app | 10 | {bio} |
- vtk-dicom | 10 | {imaging} |
- insighttoolkit4 | 9 | {imaging-dev} |
+ vtk-dicom | 11 | {imaging} |
+ insighttoolkit4 | 10 | {imaging-dev} |
+ mia | 8 | {imaging} |
multiqc | 8 | {covid-19,bio} |
orthanc-webviewer | 8 | {imaging} |
ea-utils | 7 | {bio} |
@@ -35,12 +36,12 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
jebl2 | 7 | {bio-dev} |
jellyfish1 | 7 | {bio} |
melting | 7 | {bio,cloud} |
- mia | 7 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
biojava-live | 6 | {bio-dev} |
biomaj3-cli | 6 | {cloud} |
dicompyler | 6 | {oncology} |
fastlink | 6 | {bio,cloud} |
+ libminc | 6 | {imaging-dev} |
librg-utils-perl | 6 | {bio} |
mipe | 6 | {bio,cloud} |
obitools | 6 | {bio} |
@@ -54,11 +55,9 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
embassy-domsearch | 5 | {cloud,bio} |
lagan | 5 | {bio} |
lamarc | 5 | {bio} |
- libminc | 5 | {imaging-dev} |
libncl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
- phyutility | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
@@ -83,6 +82,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
orthanc-postgresql | 4 | {imaging} |
perm | 4 | {cloud,bio} |
phast | 4 | {bio} |
+ phyutility | 4 | {bio,cloud} |
piler | 4 | {bio} |
prottest | 4 | {bio,bio-phylogeny} |
pscan-chip | 4 | {bio} |
@@ -95,6 +95,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
suitename | 4 | {bio} |
arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
+ atropos | 3 | {bio} |
bamkit | 3 | {covid-19,bio} |
cat-bat | 3 | {covid-19,bio} |
clonalframeml | 3 | {bio,covid-19} |
@@ -118,6 +119,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
rambo-k | 3 | {bio} |
rdp-alignment | 3 | {bio} |
rtax | 3 | {bio,cloud} |
+ samblaster | 3 | {covid-19,bio} |
seqsero | 3 | {bio} |
sga | 3 | {bio} |
soapaligner | 3 | {bio} |
@@ -126,7 +128,6 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
stacks | 3 | {bio} |
surankco | 3 | {bio} |
yaha | 3 | {bio} |
- atropos | 2 | {bio} |
blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
dextractor | 2 | {bio,covid-19} |
@@ -135,9 +136,8 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
libdivsufsort | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
openslide | 2 | {imaging-dev} |
- oscar | 2 | {data,tools,practice} |
plasmidseeker | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ sambamba | 2 | {bio} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
spaln | 2 | {bio,covid-19} |
@@ -159,13 +159,13 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
opensurgsim | 1 | {imaging-dev} |
+ oscar | 1 | {data,tools,practice} |
papyrus | 1 | {imaging-dev} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 1 | {bio-dev} |
- sambamba | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
skesa | 1 | {bio} |
@@ -224,8 +224,8 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {bio,covid-19} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12e60e422c99a0b2e9ffd3beed3c675483f8e78a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12e60e422c99a0b2e9ffd3beed3c675483f8e78a
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