[med-svn] [Git][med-team/hyphy][upstream] New upstream version 2.5.28+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / hyphy


Commits:
d4be209a by Michael R. Crusoe at 2021-02-19T17:15:15+01:00
New upstream version 2.5.28+dfsg
- - - - -


30 changed files:

- res/TemplateBatchFiles/Distances/JC69
- res/TemplateBatchFiles/Distances/K2P
- res/TemplateBatchFiles/Distances/K2P_RV
- res/TemplateBatchFiles/Distances/Modified_Nei_Gojobori
- res/TemplateBatchFiles/Distances/Nei_Gojobori
- res/TemplateBatchFiles/Distances/PC
- res/TemplateBatchFiles/Distances/PC_MH
- res/TemplateBatchFiles/Distances/PC_RV
- res/TemplateBatchFiles/Distances/T3P
- res/TemplateBatchFiles/Distances/TN84
- res/TemplateBatchFiles/Distances/TN93
- res/TemplateBatchFiles/Distances/TN93_RV
- res/TemplateBatchFiles/Distances/p_Distance
- res/TemplateBatchFiles/Distances/p_Distance_aa
- res/TemplateBatchFiles/Distances/p_Distance_binary
- res/TemplateBatchFiles/Distances/p_Distance_codon
- res/TemplateBatchFiles/F_ST.bf
- res/TemplateBatchFiles/SelectionAnalyses/FEL.bf
- res/TemplateBatchFiles/SelectionAnalyses/MEME.bf
- res/TemplateBatchFiles/libv3/all-terms.bf
- + res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- res/TemplateBatchFiles/partitionSequences.ibf
- src/core/batchlan.cpp
- src/core/batchlanruntime.cpp
- src/core/dataset.cpp
- src/core/global_things.cpp
- src/core/likefunc.cpp
- src/core/string_buffer.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/d4be209a7b5539ea26579d39d658d19fb05c23a6

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/d4be209a7b5539ea26579d39d658d19fb05c23a6
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