[med-svn] [Git][med-team/hyphy][master] 6 commits: New upstream version 2.5.28+dfsg

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / hyphy


Commits:
d4be209a by Michael R. Crusoe at 2021-02-19T17:15:15+01:00
New upstream version 2.5.28+dfsg
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6884fa66 by Michael R. Crusoe at 2021-02-25T17:40:09+01:00
New upstream version 2.5.29+dfsg
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98325d10 by Michael R. Crusoe at 2021-02-25T17:40:09+01:00
routine-update: New upstream version

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f742f3ae by Michael R. Crusoe at 2021-02-25T17:40:17+01:00
Update upstream source from tag 'upstream/2.5.29+dfsg'

Update to upstream version '2.5.29+dfsg'
with Debian dir ed45dae58dc3352199e76200801ae56d88d60ea8
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5b1289ed by Michael R. Crusoe at 2021-02-25T17:42:24+01:00
Removed spelling patch, it was merged upstream

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b44c5529 by Michael R. Crusoe at 2021-02-25T17:43:11+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- debian/changelog
- debian/patches/series
- − debian/patches/spelling
- res/TemplateBatchFiles/GARD.bf
- res/TemplateBatchFiles/PairwiseRelativeRatio.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
- res/TemplateBatchFiles/TemplateModels/GY94.ibf
- res/TemplateBatchFiles/TemplateModels/GY94.mdl
- res/TemplateBatchFiles/files.lst
- res/TemplateBatchFiles/libv3/UtilityFunctions.bf
- res/TemplateBatchFiles/libv3/convenience/regexp.bf
- res/TemplateBatchFiles/libv3/tasks/alignments.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- res/TemplateBatchFiles/readIndexFile.bf
- src/core/associative_list.cpp
- src/core/batchlan.cpp
- src/core/batchlan2.cpp
- src/core/batchlanruntime.cpp
- src/core/category.cpp
- src/core/constant.cpp
- src/core/formula.cpp
- src/core/global_object_lists.cpp
- src/core/global_things.cpp
- src/core/include/batchlan.h
- src/core/include/formula.h
- src/core/include/global_object_lists.h
- src/core/include/variable.h
- src/core/likefunc.cpp
- src/core/operation.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/9e1fadefc4b130ecff00222b42b7a10d02dafea7...b44c5529f2396f9c1bf9b02b31eb0f4da1622461

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/9e1fadefc4b130ecff00222b42b7a10d02dafea7...b44c5529f2396f9c1bf9b02b31eb0f4da1622461
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