[med-svn] [Git][med-team/python-cutadapt][upstream] New upstream version 3.2

[Nilesh Patra]

Nilesh Patra pushed to branch upstream at Debian Med / python-cutadapt


Commits:
ecd3e1f9 by Nilesh Patra at 2021-01-09T16:41:31+05:30
New upstream version 3.2
- - - - -


30 changed files:

- CHANGES.rst
- doc/guide.rst
- doc/installation.rst
- setup.py
- src/cutadapt/__main__.py
- src/cutadapt/_align.pyx
- src/cutadapt/adapters.py
- src/cutadapt/align.py
- src/cutadapt/filters.py
- src/cutadapt/modifiers.py
- src/cutadapt/pipeline.py
- src/cutadapt/report.py
- + src/cutadapt/tokenizer.py
- tests/cut/combinatorial/combinatorial.A_G.1.fasta → tests/cut/combinatorial/combinatorial.A_G.1.fastq
- tests/cut/combinatorial/combinatorial.A_G.2.fasta → tests/cut/combinatorial/combinatorial.A_G.2.fastq
- tests/cut/combinatorial/combinatorial.A_T.1.fasta → tests/cut/combinatorial/combinatorial.A_T.1.fastq
- tests/cut/combinatorial/combinatorial.A_T.2.fasta → tests/cut/combinatorial/combinatorial.A_T.2.fastq
- tests/cut/combinatorial/combinatorial.A_unknown.1.fasta → tests/cut/combinatorial/combinatorial.A_unknown.1.fastq
- tests/cut/combinatorial/combinatorial.A_unknown.2.fasta → tests/cut/combinatorial/combinatorial.A_unknown.2.fastq
- tests/cut/combinatorial/combinatorial.C_G.1.fasta → tests/cut/combinatorial/combinatorial.C_G.1.fastq
- tests/cut/combinatorial/combinatorial.C_G.2.fasta → tests/cut/combinatorial/combinatorial.C_G.2.fastq
- tests/cut/combinatorial/combinatorial.C_T.1.fasta → tests/cut/combinatorial/combinatorial.C_T.1.fastq
- tests/cut/combinatorial/combinatorial.C_T.2.fasta → tests/cut/combinatorial/combinatorial.C_T.2.fastq
- + tests/cut/combinatorial/combinatorial.C_unknown.1.fastq
- + tests/cut/combinatorial/combinatorial.C_unknown.2.fastq
- tests/cut/combinatorial/combinatorial.unknown_G.1.fasta → tests/cut/combinatorial/combinatorial.unknown_G.1.fastq
- tests/cut/combinatorial/combinatorial.unknown_G.2.fasta → tests/cut/combinatorial/combinatorial.unknown_G.2.fastq
- + tests/cut/combinatorial/combinatorial.unknown_T.1.fastq
- + tests/cut/combinatorial/combinatorial.unknown_T.2.fastq
- + tests/cut/combinatorial/combinatorial.unknown_unknown.1.fastq


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-cutadapt/-/commit/ecd3e1f93dff5b6d0a73a6464064e53738d60d60

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