[med-svn] [Git][med-team/vdjtools][master] 6 commits: cme fix dpkg-control
Andreas Tille
gitlab at salsa.debian.org
Wed Jan 13 10:43:01 GMT 2021
Andreas Tille pushed to branch master at Debian Med / vdjtools
Commits:
9024e8d2 by Andreas Tille at 2021-01-13T11:33:21+01:00
cme fix dpkg-control
- - - - -
65dd022b by Andreas Tille at 2021-01-13T11:35:23+01:00
Add missing Depends to provide java command
- - - - -
90ed9402 by Andreas Tille at 2021-01-13T11:35:52+01:00
routine-update: Add salsa-ci file
- - - - -
c5519132 by Andreas Tille at 2021-01-13T11:35:52+01:00
routine-update: No tab in license text
- - - - -
9e49b9e3 by Andreas Tille at 2021-01-13T11:35:58+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
- - - - -
5a0d0c25 by Andreas Tille at 2021-01-13T11:42:00+01:00
routine-update: Ready to upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- debian/copyright
- + debian/salsa-ci.yml
- debian/upstream/metadata
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+vdjtools (1.2.1+git20190311-4) unstable; urgency=medium
+
+ * Team upload.
+ * cme fix dpkg-control
+ * Add missing Depends to provide java command
+ Closes: #979760
+ * Add salsa-ci file (routine-update)
+ * No tab in license text (routine-update)
+ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+ Repository-Browse.
+
+ -- Andreas Tille <tille at debian.org> Wed, 13 Jan 2021 11:35:59 +0100
+
vdjtools (1.2.1+git20190311-3) UNRELEASED; urgency=medium
* Transfer vdjtools from Java to Debian Med team
=====================================
debian/control
=====================================
@@ -1,20 +1,28 @@
Source: vdjtools
-Section: non-free/science
-Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller at debian.org>,
tony mancill <tmancill at debian.org>
-Build-Depends: debhelper-compat (= 13), default-jdk, gradle, gradle-debian-helper, maven-repo-helper
+Section: non-free/science
+XS-Autobuild: no
+Priority: optional
+Build-Depends: debhelper-compat (= 13),
+ default-jdk,
+ gradle,
+ gradle-debian-helper,
+ maven-repo-helper
Build-Depends-Indep: groovy,
- libcommons-cli-java (>= 1.4), libcommons-io-java (>= 2.6), libcommons-lang3-java (>= 3.7),
- libgpars-groovy-java (>= 1.2.1), libmaven-shade-plugin-java (>= 3.1.0),
- libmilib-java (>= 1.8.4),
- libcommons-math3-java,
- libtrove3-java,
- junit4
+ libcommons-cli-java (>= 1.4),
+ libcommons-io-java (>= 2.6),
+ libcommons-lang3-java (>= 3.7),
+ libgpars-groovy-java (>= 1.2.1),
+ libmaven-shade-plugin-java (>= 3.1.0),
+ libmilib-java,
+ libcommons-math3-java,
+ libtrove3-java,
+ junit4
Standards-Version: 4.5.1
-Vcs-Git: https://salsa.debian.org/med-team/vdjtools.git
Vcs-Browser: https://salsa.debian.org/med-team/vdjtools
+Vcs-Git: https://salsa.debian.org/med-team/vdjtools.git
Homepage: https://github.com/mikessh/vdjtools
Rules-Requires-Root: no
@@ -30,12 +38,24 @@ Description: Java library of vdjtools
Package: vdjtools
Architecture: all
-Depends: ${misc:Depends}, libvdjtools-java
-Recommends: r-cran-ape, r-cran-ggplot2, r-cran-gplots, r-cran-mass,
- r-cran-plotrix, r-cran-rcolorbrewer, r-cran-reshape, r-cran-reshape2,
- r-cran-scales,
- r-cran-gridbase, r-cran-gridextra,
- r-cran-circlize, r-cran-venndiagram, r-cran-ffield
+Depends: ${misc:Depends},
+ ${java:Depends},
+ libvdjtools-java,
+ default-jre | java-runtime
+Recommends: r-cran-ape,
+ r-cran-ggplot2,
+ r-cran-gplots,
+ r-cran-mass,
+ r-cran-plotrix,
+ r-cran-rcolorbrewer,
+ r-cran-reshape,
+ r-cran-reshape2,
+ r-cran-scales,
+ r-cran-gridbase,
+ r-cran-gridextra,
+ r-cran-circlize,
+ r-cran-venndiagram,
+ r-cran-ffield
Description: framework for post-analysis of B/T cell repertoires
VDJtools is an open-source Java/Groovy-based framework designed
to facilitate analysis of immune repertoire sequencing (RepSeq)
=====================================
debian/copyright
=====================================
@@ -9,7 +9,7 @@ License: non-free
Files: debian/*
Copyright: 2018-2020, Steffen Moeller <moeller at debian.org>
- 2020, tony mancill <tmancill at debian.org>
+ 2020, tony mancill <tmancill at debian.org>
License: non-free
License: non-free
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/mikessh/vdjtools/issues
+Bug-Submit: https://github.com/mikessh/vdjtools/issues/new
Reference:
Author: >
M Shugay and D.V. Bagaev and M.A. Turchaninova and D.A. Bolotin
@@ -25,3 +27,5 @@ Registry:
Entry: NA
- Name: SciCrunch
Entry: NA
+Repository: https://github.com/mikessh/vdjtools.git
+Repository-Browse: https://github.com/mikessh/vdjtools
View it on GitLab: https://salsa.debian.org/med-team/vdjtools/-/compare/edd8092a9cf69fed0d1836d61c4835359b4f1690...5a0d0c25eda13e9650679d4d2f7fe542ad424f0b
--
View it on GitLab: https://salsa.debian.org/med-team/vdjtools/-/compare/edd8092a9cf69fed0d1836d61c4835359b4f1690...5a0d0c25eda13e9650679d4d2f7fe542ad424f0b
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