[med-svn] [Git][med-team/freebayes][master] 10 commits: routine-update: New upstream version

[Juhani Numminen]

Juhani Numminen pushed to branch master at Debian Med / freebayes


Commits:
2c13dbfd by Juhani Numminen at 2021-01-18T15:50:10+02:00
routine-update: New upstream version

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1058f258 by Juhani Numminen at 2021-01-18T15:50:11+02:00
New upstream version 1.3.3
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6a713254 by Juhani Numminen at 2021-01-18T15:50:21+02:00
Update upstream source from tag 'upstream/1.3.3'

Update to upstream version '1.3.3'
with Debian dir c0357d392b07e1b2c38476373d1b3df0a74d5b84
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ec756054 by Juhani Numminen at 2021-01-18T15:50:21+02:00
routine-update: Standards-Version: 4.5.1

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817209e7 by Juhani Numminen at 2021-01-18T17:38:41+02:00
Clean autogenerated test/regression/NA12878.chr22.tiny.vcf

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bd70be01 by Juhani Numminen at 2021-01-18T17:47:23+02:00
Replace Build-Depends cmake with meson and ninja-build

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d8c73e2c by Juhani Numminen at 2021-01-18T17:54:12+02:00
Adapt debian/rules to use the meson build system

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f272acc9 by Juhani Numminen at 2021-01-18T18:00:47+02:00
Remove debian/install that listed files now installed by the build system

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1ce3de80 by Juhani Numminen at 2021-01-18T19:37:01+02:00
Remove all pre-existing patches

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447c5c10 by Juhani Numminen at 2021-01-18T19:38:35+02:00
Add libraries.patch to use Debian-provided external libraries in meson

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23 changed files:

- + .github/ISSUE_TEMPLATE/bug_report.md
- + .github/workflows/ci_test.yml
- + .github/workflows/issue-tracker-bot.yaml
- + .github/workflows/main.yml
- .gitignore
- .gitmodules
- .travis.yml
- + CMakeLists.txt
- − Makefile
- README.md
- + RELEASE-NOTES.md
- + contrib/README.md
- + contrib/SeqLib/LICENSE
- + contrib/SeqLib/README.md
- + contrib/SeqLib/SeqLib/BamHeader.h
- + contrib/SeqLib/SeqLib/BamReader.h
- + contrib/SeqLib/SeqLib/BamRecord.h
- + contrib/SeqLib/SeqLib/BamWalker.h
- + contrib/SeqLib/SeqLib/BamWriter.h
- + contrib/SeqLib/SeqLib/GenomicRegion.h
- + contrib/SeqLib/SeqLib/GenomicRegionCollection.cpp
- + contrib/SeqLib/SeqLib/GenomicRegionCollection.h
- + contrib/SeqLib/SeqLib/IntervalTree.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/compare/d41223e521c0da9835025d4f192ff62c8b2a84d6...447c5c10b6f7d3bc905dc1e496c2f77ebedd487a

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View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/compare/d41223e521c0da9835025d4f192ff62c8b2a84d6...447c5c10b6f7d3bc905dc1e496c2f77ebedd487a
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