[med-svn] [Git][med-team/pufferfish][upstream] 2 commits: New upstream version 1.3.0

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch upstream at Debian Med / pufferfish


Commits:
18d91ee0 by Michael R. Crusoe at 2020-07-08T17:44:44+02:00
New upstream version 1.3.0
- - - - -
574e179d by Michael R. Crusoe at 2021-01-19T08:03:16+01:00
New upstream version 1.4.0
- - - - -


27 changed files:

- CMakeLists.txt
- cmake/Modules/FindJemalloc.cmake
- external/twopaco/graphdump/compact_vector/compact_vector.hpp
- external/twopaco/graphdump/graphdumpBinaryWriter.hpp
- include/BooPHF.hpp
- + include/BulkChunk.hpp
- include/CanonicalKmer.hpp
- include/CanonicalKmerIterator.hpp
- include/FastxParserThreadUtils.hpp
- include/Kmer.hpp
- include/MemChainer.hpp
- include/MemCollector.hpp
- include/ProgOpts.hpp
- include/PuffAligner.hpp
- include/PufferfishBaseIndex.hpp
- include/PufferfishIndex.hpp
- include/PufferfishLossyIndex.hpp
- include/PufferfishSparseIndex.hpp
- include/SAMWriter.hpp
- include/Util.hpp
- include/chobo/memory_view.hpp
- include/chobo/static_vector.hpp
- include/clipp.h
- include/compact_vector/compact_vector.hpp
- include/ksw2pp/KSW2Aligner.hpp
- include/ksw2pp/ksw2.h
- include/parallel_hashmap/phmap.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/edb5bd06fdf6b5ff7d59afbcaf73f83ef2835a9f...574e179dc42a22c34907e665502e4bcb494ba689

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View it on GitLab: https://salsa.debian.org/med-team/pufferfish/-/compare/edb5bd06fdf6b5ff7d59afbcaf73f83ef2835a9f...574e179dc42a22c34907e665502e4bcb494ba689
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