[med-svn] [Git][med-team/toil][master] 9 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
386e4383 by Michael R. Crusoe at 2021-01-24T11:32:40+01:00
routine-update: New upstream version

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c062ae49 by Michael R. Crusoe at 2021-01-24T11:32:41+01:00
New upstream version 5.2.0
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04cd1fb2 by Michael R. Crusoe at 2021-01-24T11:32:47+01:00
Update upstream source from tag 'upstream/5.2.0'

Update to upstream version '5.2.0'
with Debian dir 4f9a2ad068fefeaedb37d3b1a1c536517691232e
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87838f41 by Michael R. Crusoe at 2021-01-24T11:32:47+01:00
routine-update: Standards-Version: 4.5.1

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b67c1d80 by Michael R. Crusoe at 2021-01-24T11:39:19+01:00
Freshen patches

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44d39c5a by Michael R. Crusoe at 2021-01-24T11:48:16+01:00
update some copyright info

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efc20eda by Michael R. Crusoe at 2021-01-24T12:53:10+01:00
The python module "wdlparse" is not yet packaged for Debian; disable toil-wdl-runner in this release.

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ac8f9670 by Michael R. Crusoe at 2021-01-24T12:54:52+01:00
debian/control: update the minimum version of cwltool required

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f63eb972 by Michael R. Crusoe at 2021-01-24T12:54:52+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- + .github/PULL_REQUEST_TEMPLATE.md
- .gitlab-ci.yml
- .travis.yml
- Makefile
- common.mk
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/debianize_docs
- debian/patches/no_galaxy_lib
- − debian/patches/remove-pathlib2-dep
- debian/patches/series
- debian/patches/setting_version.patch
- debian/patches/soften-mesos-deps
- debian/patches/version.patch
- + debian/patches/wdlparse_not_available
- debian/tests/smoke-test
- docker/Dockerfile.py
- docs/appendices/environment_vars.rst
- docs/conf.py
- docs/contributing/contributing.rst
- docs/gettingStarted/quickStart.rst
- docs/running/cliOptions.rst
- docs/running/cloud/amazon.rst
- docs/running/cloud/clusterUtils.rst
- docs/running/cloud/gce.rst
- docs/running/cloud/kubernetes.rst
- docs/running/cwl.rst
- docs/running/debugging.rst
- docs/running/introduction.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/453cb8cc3b0578e30a71537ba3bca311d714fd53...f63eb972952f6be44b41d31fdad93363a28baa8b

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/453cb8cc3b0578e30a71537ba3bca311d714fd53...f63eb972952f6be44b41d31fdad93363a28baa8b
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