[med-svn] [Git][med-team/bcbio][master] 3 commits: New upstream version 1.2.5

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
1c20dafa by Steffen Moeller at 2021-01-26T13:53:56+01:00
New upstream version 1.2.5
- - - - -
17c33c5a by Steffen Moeller at 2021-01-26T13:54:36+01:00
Update upstream source from tag 'upstream/1.2.5'

Update to upstream version '1.2.5'
with Debian dir 170647d8542f5cc09d1688feb0947f06d4cb0f01
- - - - -
bbe5fb17 by Steffen Moeller at 2021-01-26T14:22:57+01:00
New upstream version.

- - - - -


30 changed files:

- HISTORY.md
- MANIFEST.in
- README.md
- bcbio/bam/__init__.py
- bcbio/bam/cram.py
- bcbio/chipseq/antibodies.py
- bcbio/chipseq/atac.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- + bcbio/dragen/__init__.py
- + bcbio/dragen/dragen.py
- bcbio/heterogeneity/loh.py
- bcbio/install.py
- bcbio/ngsalign/alignprep.py
- bcbio/ngsalign/postalign.py
- bcbio/pipeline/datadict.py
- bcbio/pipeline/genome.py
- bcbio/pipeline/main.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/pipeline/sample.py
- bcbio/rnaseq/count.py
- bcbio/rnaseq/featureCounts.py
- bcbio/rnaseq/salmon.py
- + bcbio/scripts/R/bcbio2se.R
- + bcbio/scripts/R/se2qc.Rmd
- bcbio/structural/__init__.py
- bcbio/structural/delly.py
- bcbio/structural/lumpy.py
- bcbio/structural/purecn.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/a48982aa7bca71129decc931487c09ef30496119...bbe5fb17531f381785724476861b81cf9d2eba99

-- 
View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/a48982aa7bca71129decc931487c09ef30496119...bbe5fb17531f381785724476861b81cf9d2eba99
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20210126/9f68b8cb/attachment.html>