[med-svn] [Git][med-team/phyx][master] 7 commits: New upstream version 1.3+ds

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / phyx


Commits:
e06a933e by Nilesh Patra at 2021-07-10T19:26:26+05:30
New upstream version 1.3+ds
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47e5fc09 by Nilesh Patra at 2021-07-10T19:26:33+05:30
Update upstream source from tag 'upstream/1.3+ds'

Update to upstream version '1.3+ds'
with Debian dir bd4bf5d83cc0cc3f926b526e3c9293d1877ca025
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9811b57d by Nilesh Patra at 2021-07-10T20:01:17+05:30
d/p: Refresh and adapt patches to new upstream release

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a1e28805 by Nilesh Patra at 2021-07-10T20:23:29+05:30
d/p/hardening.patch: Inject CPPFLAGS and LDFLAGS at needed places

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91a33a3f by Nilesh Patra at 2021-07-10T20:41:24+05:30
d/p/build-more-programs.patch: Also build and vendor pxupgma pxnj

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72f7bef7 by Nilesh Patra at 2021-07-10T20:41:24+05:30
d/tests/run-unit-test: Fix autopkgtests

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27202470 by Nilesh Patra at 2021-07-10T20:41:35+05:30
d/ch: Update TODO

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13 changed files:

- + .github/workflows/build-test.yml
- .gitignore
- − .travis.yml
- README.md
- debian/changelog
- + debian/patches/build-more-programs.patch
- debian/patches/hardening.patch
- debian/patches/link_lnlopt.patch
- debian/patches/series
- debian/tests/run-unit-test
- − example_files/pxaa2cdn_example/AA_Alignment.fa
- + example_files/pxaa2cdn_example/ND6_aa.fa
- + example_files/pxaa2cdn_example/ND6_nuc.fa


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/phyx/-/compare/299f7257d1c8f541ac20f9a62ec14f6e9c84e712...2720247011c68d205fbc7f52b6700c963d450584

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View it on GitLab: https://salsa.debian.org/med-team/phyx/-/compare/299f7257d1c8f541ac20f9a62ec14f6e9c84e712...2720247011c68d205fbc7f52b6700c963d450584
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