Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
998864eb by Andreas Tille at 2021-07-11T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,51 +1,53 @@
-Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
+Last-Update: Sun, 11 Jul 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 170 | {covid-19,imaging} |
orthanc | 89 | {imaging,covid-19,practice} |
- orthanc-wsi | 48 | {oncology,laboratory,imaging,covid-19,his,practice} |
- gdcm | 34 | {imaging-dev} |
- amide | 28 | {imaging} |
+ orthanc-wsi | 49 | {imaging,practice,his,covid-19,oncology,laboratory} |
+ gdcm | 35 | {imaging-dev} |
+ amide | 29 | {imaging} |
+ dicomscope | 28 | {imaging} |
htsjdk | 27 | {bio-dev} |
dicom3tools | 26 | {imaging} |
- dicomscope | 26 | {imaging} |
- dcm2niix | 20 | {imaging} |
+ dcm2niix | 22 | {imaging} |
gdcm | 18 | {covid-19,imaging} |
- odin | 18 | {imaging,imaging-dev} |
- ngs-sdk | 15 | {bio-dev} |
+ odin | 18 | {imaging-dev,imaging} |
+ ngs-sdk | 14 | {bio-dev} |
minc-tools | 13 | {imaging} |
- openslide | 13 | {imaging} |
- gnumed-server | 12 | {practice,covid-19} |
insighttoolkit4 | 12 | {imaging-dev} |
orthanc-webviewer | 12 | {imaging} |
pixelmed | 12 | {imaging} |
dicomnifti | 11 | {imaging} |
+ gnumed-server | 11 | {covid-19,practice} |
invesalius | 11 | {imaging} |
+ openslide | 11 | {imaging} |
adun.app | 9 | {bio} |
+ nifticlib | 9 | {imaging} |
gdcm | 8 | {imaging-dev} |
- nifticlib | 8 | {imaging} |
+ ngs-sdk | 8 | {bio-dev} |
plastimatch | 8 | {imaging} |
libminc | 7 | {imaging-dev} |
mia | 7 | {imaging} |
- ngs-sdk | 7 | {bio-dev} |
dicompyler | 6 | {oncology} |
libdivsufsort | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
nifticlib | 6 | {imaging-dev} |
- openslide | 6 | {imaging-dev} |
sight | 6 | {imaging} |
busco | 5 | {bio,covid-19} |
ea-utils | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
- king | 5 | {typesetting,imaging} |
+ king | 5 | {imaging,typesetting} |
librg-utils-perl | 5 | {bio} |
nifti2dicom | 5 | {imaging} |
+ openslide | 5 | {imaging-dev} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
- treeview | 5 | {bio,bio-phylogeny} |
+ salmid | 5 | {bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ ngs-sdk | 4 | {bio-dev} |
+ orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {tools,data,practice} |
runcircos-gui | 4 | {bio} |
- salmid | 4 | {bio} |
stacks | 4 | {bio} |
bart-view | 3 | {imaging} |
biojava-live | 3 | {bio-dev} |
@@ -56,20 +58,19 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
lagan | 3 | {bio} |
libsbml | 3 | {bio-dev} |
melting | 3 | {cloud,bio} |
- ngs-sdk | 3 | {bio-dev} |
nipype | 3 | {imaging-dev,imaging} |
- orthanc-postgresql | 3 | {imaging} |
+ obitools | 3 | {bio} |
pbdagcon | 3 | {bio} |
- phast | 3 | {bio} |
staden | 3 | {bio} |
tracetuner | 3 | {bio} |
beast-mcmc | 2 | {bio-phylogeny,bio} |
+ biomaj3-cli | 2 | {cloud} |
bitseq | 2 | {bio} |
brig | 2 | {bio} |
canu | 2 | {bio} |
embassy-domainatrix | 2 | {cloud,bio} |
embassy-domalign | 2 | {cloud,bio} |
- embassy-domsearch | 2 | {cloud,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
fsm-lite | 2 | {bio} |
gatb-core | 2 | {bio} |
ghmm | 2 | {bio} |
@@ -77,28 +78,27 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
lamarc | 2 | {bio} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
mhap | 2 | {bio,bio-ngs} |
- obitools | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
orthanc-mysql | 2 | {imaging} |
- phyutility | 2 | {cloud,bio} |
+ phast | 2 | {bio} |
+ phyutility | 2 | {bio,cloud} |
piler | 2 | {bio} |
pymia | 2 | {imaging-dev} |
rdp-classifier | 2 | {bio} |
saint | 2 | {bio} |
- salmon | 2 | {covid-19,bio} |
- samblaster | 2 | {bio,covid-19} |
- sibsim4 | 2 | {bio,cloud} |
+ salmon | 2 | {bio,covid-19} |
+ samblaster | 2 | {covid-19,bio} |
+ sibsim4 | 2 | {cloud,bio} |
spread-phy | 2 | {bio,bio-phylogeny} |
anfo | 1 | {bio,cloud} |
- arden | 1 | {bio,cloud} |
+ arden | 1 | {cloud,bio} |
assemblytics | 1 | {bio} |
- biomaj3-cli | 1 | {cloud} |
- bio-tradis | 1 | {bio,bio-dev} |
+ bio-tradis | 1 | {bio-dev,bio} |
blimps | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
clonalframeml | 1 | {covid-19,bio} |
clonalorigin | 1 | {bio} |
- cufflinks | 1 | {bio,cloud} |
+ cufflinks | 1 | {cloud,bio} |
delly | 1 | {bio,covid-19} |
ecopcr | 1 | {bio} |
estscan | 1 | {bio} |
@@ -107,7 +107,6 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
hinge | 1 | {bio} |
ipig | 1 | {bio} |
jmodeltest | 1 | {bio-phylogeny,bio} |
- libctapimkt | 1 | {practice} |
libncl | 1 | {bio} |
libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
@@ -117,8 +116,8 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
microbegps | 1 | {bio} |
orthanc-python | 1 | {covid-19} |
papyrus | 1 | {imaging-dev} |
- paraclu | 1 | {bio,cloud} |
- perm | 1 | {bio,cloud} |
+ paraclu | 1 | {cloud,bio} |
+ perm | 1 | {cloud,bio} |
placnet | 1 | {bio} |
plasmidseeker | 1 | {bio} |
prime-phylo | 1 | {cloud,bio} |
@@ -128,7 +127,7 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
quorum | 1 | {bio} |
rambo-k | 1 | {bio} |
rdp-alignment | 1 | {bio} |
- rtax | 1 | {bio,cloud} |
+ rtax | 1 | {cloud,bio} |
sambamba | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
@@ -143,24 +142,24 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
tvc | 1 | {bio} |
yaha | 1 | {bio} |
zalign | 1 | {cloud,bio} |
- acedb | 0 | {cloud,bio} |
+ acedb | 0 | {bio,cloud} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
- bamkit | 0 | {covid-19,bio} |
- bbmap | 0 | {covid-19,bio} |
+ bamkit | 0 | {bio,covid-19} |
+ bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
- dextractor | 0 | {covid-19,bio} |
+ dextractor | 0 | {bio,covid-19} |
eegdev | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
- intake | 0 | {bio,bio-dev} |
+ intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -174,13 +173,14 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
libchado-perl | 0 | {bio-dev} |
+ libctapimkt | 0 | {practice} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libmuscle | 0 | {bio-dev} |
@@ -207,8 +207,8 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- plasmidid | 0 | {bio,covid-19} |
- pplacer | 0 | {covid-19,bio,bio-phylogeny} |
+ plasmidid | 0 | {covid-19,bio} |
+ pplacer | 0 | {bio-phylogeny,covid-19,bio} |
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio-dev,covid-19} |
python-wdlparse | 0 | {bio-dev} |
@@ -216,21 +216,21 @@ Last-Update: Sun, 11 Jul 2021 01:42:03 +0000
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
- spaln | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
srf | 0 | {bio-dev} |
svim | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
- tophat-recondition | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
+ tophat-recondition | 0 | {bio,covid-19} |
trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
- vienna-rna | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
+ vienna-rna | 0 | {covid-19,bio} |
xdffileio | 0 | {imaging-dev} |
yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/998864eb60584c00b5d3eee0a020c733676fbce0
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/998864eb60584c00b5d3eee0a020c733676fbce0
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