[med-svn] [Git][med-team/hhsuite][repro] Attempt reproducible build

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch repro at Debian Med / hhsuite


Commits:
4d87b6ae by Nilesh Patra at 2021-07-17T21:33:10+05:30
Attempt reproducible build

- - - - -


3 changed files:

- + debian/patches/fix
- debian/patches/series
- debian/salsa-ci.yml


Changes:

=====================================
debian/patches/fix
=====================================
@@ -0,0 +1,32 @@
+--- a/src/hhhitlist.cpp
++++ b/src/hhhitlist.cpp
+@@ -26,8 +26,17 @@
+ 
+   // Print date stamp
+   time_t* tp = new time_t;
+-  *tp = time(NULL);
+-
++  char *source_date_epoch = std::getenv("SOURCE_DATE_EPOCH");
++  if (source_date_epoch) {
++    std::istringstream iss(source_date_epoch);
++    iss >> *tp;
++    if (iss.fail() || !iss.eof()) {
++      std::cerr << "Error: Cannot parse SOURCE_DATE_EPOCH as integer\n";
++      exit(27);
++    }
++  } else {
++    *tp = std::time(NULL);
++  }
+   out << "Date          " << ctime(tp);
+   delete (tp);
+ 
+--- a/data/query.hhr
++++ b/data/query.hhr
+@@ -3,7 +3,6 @@
+ No_of_seqs    1 out of 1
+ Neff          1.0 
+ Searched_HMMs 1000
+-Date          Fri Jul 26 12:18:42 2013
+ Command       ./hhblits -i ../data/query.seq -d /home/meiermark/databases/uniprot20_2013_03/uniprot20_2013_03 -cpu 4 -n 1 -usecs -scores ./test.scores 
+ 
+  No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM


=====================================
debian/patches/series
=====================================
@@ -5,3 +5,4 @@ drop-fmemopen.h.patch
 python3
 ppc64el.patch
 exe_suffix
+fix


=====================================
debian/salsa-ci.yml
=====================================
@@ -2,3 +2,4 @@
 include:
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+



View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/commit/4d87b6ae609591b019e38e26bd167c400b40a3b8

-- 
View it on GitLab: https://salsa.debian.org/med-team/hhsuite/-/commit/4d87b6ae609591b019e38e26bd167c400b40a3b8
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