[med-svn] [Git][med-team/cct][master] 7 commits: routine-update: Fix watchfile to detect new versions on github

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / cct


Commits:
e2885fc7 by Andreas Tille at 2021-07-20T07:52:29+02:00
routine-update: Fix watchfile to detect new versions on github

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5d7682a8 by Andreas Tille at 2021-07-20T07:56:27+02:00
routine-update: New upstream version

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8c996c30 by Andreas Tille at 2021-07-20T07:56:31+02:00
New upstream version 1.0.2
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b99a55b9 by Andreas Tille at 2021-07-20T07:58:43+02:00
Update upstream source from tag 'upstream/1.0.2'

Update to upstream version '1.0.2'
with Debian dir 66d6a784f72e12e5c91e1031004e56ab80ee930b
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f25d6e49 by Andreas Tille at 2021-07-20T07:58:43+02:00
routine-update: Standards-Version: 4.5.1

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eb9cd4a6 by Andreas Tille at 2021-07-20T07:58:56+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

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55e24027 by Andreas Tille at 2021-07-20T10:00:10+02:00
Adapt patches

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30 changed files:

- README.md
- debian/changelog
- debian/control
- debian/patches/cgview_path.patch
- debian/patches/conditionalize_blast_-Q_-D.patch
- debian/patches/series
- debian/patches/testscripts.patch
- debian/upstream/metadata
- debian/watch
- lib/scripts/assign_cogs/test.sh
- lib/scripts/cgview_xml_builder/test_input/R_denitrificans.cogs
- lib/scripts/convert_vcf_to_features/test.sh
- lib/scripts/get_cds/test.sh
- lib/scripts/get_orfs/test.sh
- lib/scripts/local_blast_client/local_blast_client.pl
- lib/scripts/local_blast_client/test.sh
- lib/scripts/ncbi_search/README.md
- lib/scripts/ncbi_search/ncbi_search.pl
- lib/scripts/ncbi_search/test.sh
- lib/scripts/sequence_to_multi_fasta/test.sh
- scripts/build_blast_atlas.sh
- scripts/build_blast_atlas_all_vs_all.sh
- scripts/build_cog_db.sh
- scripts/check_env.sh
- scripts/create_zoomed_maps.sh
- scripts/fetch_all_refseq_bacterial_genomes.sh
- scripts/fetch_all_refseq_chloroplast_genomes.sh
- scripts/fetch_all_refseq_mitochondrial_genomes.sh
- scripts/fetch_genome_by_accession.sh
- scripts/fetch_refseq_bacterial_genomes_by_name.sh


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/cct/-/compare/3b43719bc1087426148aaa83b6918b7ed0eaa962...55e24027b3c439125f81c7b3ef919b332b6991ae

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View it on GitLab: https://salsa.debian.org/med-team/cct/-/compare/3b43719bc1087426148aaa83b6918b7ed0eaa962...55e24027b3c439125f81c7b3ef919b332b6991ae
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