[med-svn] [Git][med-team/spaced][master] 4 commits: Add test data

[Shruti Sridhar (@shruti_sridhar)]

Shruti Sridhar pushed to branch master at Debian Med / spaced


Commits:
921df8d2 by Shruti Sridhar at 2021-07-22T21:21:43+05:30
Add test data

- - - - -
298e48a0 by Shruti Sridhar at 2021-07-22T21:22:14+05:30
Add autopkgtests

- - - - -
9842f2b5 by Shruti Sridhar at 2021-07-22T21:22:30+05:30
Install docs

- - - - -
0b545da4 by Shruti Sridhar at 2021-07-22T21:24:09+05:30
Update changelog

- - - - -


9 changed files:

- + debian/README.test
- debian/changelog
- debian/copyright
- + debian/docs
- + debian/examples
- + debian/tests/control
- + debian/tests/data/pattern
- + debian/tests/data/sequence.fasta
- + debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,15 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.
+
+Notes on the files used for testing 
+────────────────────────────────────────
+Files: debian/tests/data/*
+
+The test files (sequence.fasta and patter) was written for testing this package.  
+


=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+spaced (1.2.0-201605+dfsg-3) UNRELEASED; urgency=medium
+
+  * Team Upload.
+  * Add test data
+  * Add autopkgtests
+  * Install docs
+
+ -- Shruti Sridhar <shruti.sridhar99 at gmail.com>  Thu, 22 Jul 2021 21:23:23 +0530
+
 spaced (1.2.0-201605+dfsg-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/copyright
=====================================
@@ -11,6 +11,10 @@ Files: debian/*
 Copyright: © 2016 Fabian Klötzl <kloetzl at evolbio.mpg.de>
 License: GPL-3+
 
+Files: debian/tests/data
+Copyright: © 2020 Shruti Sridhar <shruti.sridhar99 at gmail.com>
+License: GPL-3+
+
 Files: debian/patches/0003-Add-autotools-buildsystem.patch
 Copyright: 2008 Benjamin Kostnik <bkoz at redhat.com>,
            2012 Zack Weinberg <zackw at panix.com>,


=====================================
debian/docs
=====================================
@@ -0,0 +1,3 @@
+README
+debian/README*
+debian/tests/run-unit-test


=====================================
debian/examples
=====================================
@@ -0,0 +1 @@
+debian/tests/data/*
\ No newline at end of file


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=====================================
debian/tests/data/pattern
=====================================
@@ -0,0 +1 @@
+11001
\ No newline at end of file


=====================================
debian/tests/data/sequence.fasta
=====================================
@@ -0,0 +1,5 @@
+>AT1G00001|1|test
+ATGCCGATGACTAGACTAGACATAGACATA
+GGGAATAGACATAGACATAGAGCATAGACA
+GATAGAGAGAACAGATAGACACACATAGACA
+CACAG
\ No newline at end of file


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,17 @@
+#!/bin/bash
+set -e
+
+pkg=spaced
+
+export LC_ALL=C.UTF-8
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+spaced -o output -f pattern sequence.fasta 
+[ -s "output" ] && echo "Pass Test"



View it on GitLab: https://salsa.debian.org/med-team/spaced/-/compare/f3a625f1c0a8ec440a3948dd9324e7dde4ac3ec2...0b545da4584465e42958e6b7d8278fad4a7b3e38

-- 
View it on GitLab: https://salsa.debian.org/med-team/spaced/-/compare/f3a625f1c0a8ec440a3948dd9324e7dde4ac3ec2...0b545da4584465e42958e6b7d8278fad4a7b3e38
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