[med-svn] [Git][med-team/beagle][master] 3 commits: New upstream version 5.2-210628

[Dylan Aïssi (@daissi)]

Dylan Aïssi pushed to branch master at Debian Med / beagle


Commits:
57d48402 by Dylan Aïssi at 2021-07-23T18:14:25+02:00
New upstream version 5.2-210628
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12229ff5 by Dylan Aïssi at 2021-07-23T18:14:26+02:00
Update upstream source from tag 'upstream/5.2-210628'

Update to upstream version '5.2-210628'
with Debian dir 13430026f61a17bbed5e1c512c5a76e1810e46cb
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f8ee64f8 by Dylan Aïssi at 2021-07-23T18:16:41+02:00
Bump changelogs

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30 changed files:

- beagleutil/ChromIds.java
- beagleutil/ChromInterval.java
- beagleutil/IntInterval.java
- + beagleutil/PbwtDivUpdater.java
- beagleutil/PbwtUpdater.java
- beagleutil/SampleIds.java
- beagleutil/ThreadSafeIndexer.java
- blbutil/BGZIPOutputStream.java
- + blbutil/BitList.java
- + blbutil/BlockLineReader.java
- blbutil/Const.java
- blbutil/DoubleArray.java
- blbutil/FileIt.java
- blbutil/FileUtil.java
- blbutil/Filter.java
- blbutil/FloatArray.java
- blbutil/FloatList.java
- blbutil/InputIt.java
- blbutil/MultiThreadUtils.java
- blbutil/Pair.java
- blbutil/SampleFileIt.java
- blbutil/StringUtil.java
- blbutil/Utilities.java
- blbutil/Validate.java
- bref/AsIsBref3Writer.java
- bref/Bref3.java
- bref/Bref3It.java
- bref/Bref3Reader.java
- bref/BrefBlock.java
- bref/BrefWriter.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/c846634e9f619bf4693c3409cc15dd0129a2cd25...f8ee64f8029180aa2c381b7a7e62caeba86aee94

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View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/c846634e9f619bf4693c3409cc15dd0129a2cd25...f8ee64f8029180aa2c381b7a7e62caeba86aee94
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