Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
08a7b301 by Andreas Tille at 2021-06-29T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,55 +1,58 @@
-Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
+Last-Update: Tue, 29 Jun 2021 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 168 | {covid-19,imaging} |
- orthanc | 86 | {imaging,covid-19,practice} |
- orthanc-wsi | 44 | {oncology,laboratory,imaging,covid-19,his,practice} |
- gdcm | 39 | {imaging-dev} |
- htsjdk | 26 | {bio-dev} |
- amide | 25 | {imaging} |
- openslide | 22 | {imaging} |
- dicom3tools | 20 | {imaging} |
- dicomscope | 19 | {imaging} |
- dcm2niix | 17 | {imaging} |
- odin | 15 | {imaging,imaging-dev} |
- ngs-sdk | 14 | {bio-dev} |
- orthanc-webviewer | 14 | {imaging} |
- gdcm | 13 | {covid-19,imaging} |
+ dcmtk | 173 | {covid-19,imaging} |
+ orthanc | 91 | {imaging,covid-19,practice} |
+ orthanc-wsi | 49 | {oncology,laboratory,imaging,covid-19,his,practice} |
+ gdcm | 36 | {imaging-dev} |
+ htsjdk | 28 | {bio-dev} |
+ amide | 26 | {imaging} |
+ openslide | 23 | {imaging} |
+ dicom3tools | 22 | {imaging} |
+ dicomscope | 20 | {imaging} |
+ dcm2niix | 19 | {imaging} |
+ odin | 17 | {imaging,imaging-dev} |
+ gdcm | 15 | {covid-19,imaging} |
+ ngs-sdk | 15 | {bio-dev} |
+ orthanc-webviewer | 15 | {imaging} |
insighttoolkit4 | 13 | {imaging-dev} |
- adun.app | 12 | {bio} |
+ invesalius | 13 | {imaging} |
gnumed-server | 12 | {practice,covid-19} |
- invesalius | 12 | {imaging} |
- dicomnifti | 9 | {imaging} |
- minc-tools | 9 | {imaging} |
- nifticlib | 9 | {imaging} |
+ adun.app | 11 | {bio} |
+ minc-tools | 11 | {imaging} |
+ dicomnifti | 10 | {imaging} |
+ nifticlib | 10 | {imaging} |
+ pixelmed | 10 | {imaging} |
gdcm | 8 | {imaging-dev} |
- pixelmed | 8 | {imaging} |
ngs-sdk | 7 | {bio-dev} |
- openslide | 7 | {imaging-dev} |
busco | 6 | {bio,covid-19} |
libminc | 6 | {imaging-dev} |
nifti2dicom | 6 | {imaging} |
+ openslide | 6 | {imaging-dev} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
salmid | 6 | {bio} |
- biojava-live | 5 | {bio-dev} |
ea-utils | 5 | {bio} |
jebl2 | 5 | {bio-dev} |
librg-utils-perl | 5 | {bio} |
+ mia | 5 | {imaging} |
+ ngs-sdk | 5 | {bio-dev} |
nifti2dicom | 5 | {imaging} |
nifticlib | 5 | {imaging-dev} |
+ plastimatch | 5 | {imaging} |
salmon | 5 | {covid-19,bio} |
+ sight | 5 | {imaging} |
+ biojava-live | 4 | {bio-dev} |
dicompyler | 4 | {oncology} |
+ king | 4 | {typesetting,imaging} |
+ libdivsufsort | 4 | {bio-dev} |
melting | 4 | {cloud,bio} |
- mia | 4 | {imaging} |
- ngs-sdk | 4 | {bio-dev} |
+ nipype | 4 | {imaging-dev,imaging} |
orthanc-mysql | 4 | {imaging} |
orthanc-postgresql | 4 | {imaging} |
oscar | 4 | {tools,data,practice} |
phast | 4 | {bio} |
- plastimatch | 4 | {imaging} |
runcircos-gui | 4 | {bio} |
- sight | 4 | {imaging} |
treeview | 4 | {bio,bio-phylogeny} |
bart-view | 3 | {imaging} |
beast-mcmc | 3 | {bio-phylogeny,bio} |
@@ -61,11 +64,8 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
embassy-domalign | 3 | {cloud,bio} |
emboss-explorer | 3 | {bio} |
getdata | 3 | {bio} |
- king | 3 | {typesetting,imaging} |
lagan | 3 | {bio} |
- libdivsufsort | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
- nipype | 3 | {imaging-dev,imaging} |
obitools | 3 | {bio} |
saint | 3 | {bio} |
spread-phy | 3 | {bio,bio-phylogeny} |
@@ -88,7 +88,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
lamarc | 2 | {bio} |
libncl | 2 | {bio} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
- logol | 2 | {bio} |
mhap | 2 | {bio,bio-ngs} |
orthanc-gdcm | 2 | {imaging} |
pbdagcon | 2 | {bio} |
@@ -118,6 +117,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
libmuscle | 1 | {bio-dev} |
libpal-java | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ logol | 1 | {bio} |
mauve-aligner | 1 | {bio} |
metaphlan2 | 1 | {bio} |
microbegps | 1 | {bio} |
@@ -129,6 +129,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
plasmidseeker | 1 | {bio} |
proalign | 1 | {bio,bio-phylogeny} |
pscan-chip | 1 | {bio} |
+ python-wdlparse | 1 | {bio-dev} |
qcumber | 1 | {bio} |
rambo-k | 1 | {bio} |
rdp-alignment | 1 | {bio} |
@@ -213,7 +214,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
python-bcbio-gff | 0 | {bio-dev} |
python-epimodels | 0 | {epi} |
python-seqcluster | 0 | {bio-dev,covid-19} |
- python-wdlparse | 0 | {bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356
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