Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c236e7d5 by Andreas Tille at 2021-03-03T13:42:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,139 +1,138 @@
-Last-Update: Wed, 03 Mar 2021 01:42:04 +0000
+Last-Update: Wed, 03 Mar 2021 13:42:09 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {imaging,covid-19} |
- orthanc | 96 | {covid-19,imaging,practice} |
- orthanc-wsi | 49 | {imaging,covid-19,laboratory,his,oncology,practice} |
- gdcm | 46 | {imaging-dev} |
- amide | 40 | {imaging} |
- dicom3tools | 38 | {imaging} |
- dicomscope | 31 | {imaging} |
- dcm2niix | 24 | {imaging} |
+ dcmtk | 183 | {imaging,covid-19} |
+ orthanc | 95 | {covid-19,imaging,practice} |
+ gdcm | 49 | {imaging-dev} |
+ orthanc-wsi | 47 | {imaging,covid-19,laboratory,his,oncology,practice} |
+ amide | 38 | {imaging} |
+ dicom3tools | 37 | {imaging} |
+ dicomscope | 29 | {imaging} |
htsjdk | 24 | {bio-dev} |
- nifticlib | 24 | {imaging} |
+ dcm2niix | 23 | {imaging} |
+ nifticlib | 23 | {imaging} |
dicomnifti | 22 | {imaging} |
- minc-tools | 21 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
- odin | 20 | {imaging,imaging-dev} |
- plastimatch | 17 | {imaging} |
- invesalius | 16 | {imaging} |
+ minc-tools | 20 | {imaging} |
+ gdcm | 19 | {covid-19,imaging} |
+ odin | 19 | {imaging,imaging-dev} |
+ plastimatch | 16 | {imaging} |
vtk-dicom | 16 | {imaging} |
gnumed-server | 15 | {covid-19,practice} |
- mia | 14 | {imaging} |
+ invesalius | 15 | {imaging} |
pixelmed | 14 | {imaging} |
- gdcm | 13 | {imaging-dev} |
- ngs-sdk | 13 | {bio-dev} |
- openslide | 13 | {imaging} |
- nifti2dicom | 12 | {imaging} |
- adun.app | 11 | {bio} |
- king | 11 | {typesetting,imaging} |
- nifti2dicom | 11 | {imaging} |
+ mia | 13 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
+ ngs-sdk | 12 | {bio-dev} |
+ openslide | 12 | {imaging} |
insighttoolkit4 | 10 | {imaging-dev} |
- jebl2 | 10 | {bio-dev} |
+ king | 10 | {typesetting,imaging} |
+ nifti2dicom | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
- biojava-live | 9 | {bio-dev} |
- jellyfish1 | 9 | {bio} |
- melting | 9 | {bio,cloud} |
- phast | 8 | {bio} |
- anfo | 7 | {bio,cloud} |
- beast-mcmc | 7 | {bio,bio-phylogeny} |
- bio-tradis | 7 | {bio,bio-dev} |
- bitseq | 7 | {bio} |
+ adun.app | 9 | {bio} |
+ jebl2 | 9 | {bio-dev} |
+ nifti2dicom | 9 | {imaging} |
+ melting | 8 | {bio,cloud} |
+ biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
ea-utils | 7 | {bio} |
- ecopcr | 7 | {bio} |
- embassy-domainatrix | 7 | {bio,cloud} |
+ jellyfish1 | 7 | {bio} |
lagan | 7 | {bio} |
- libncl | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
- perm | 7 | {cloud,bio} |
- quorum | 7 | {bio} |
- stacks | 7 | {bio} |
- treeview | 7 | {bio-phylogeny,bio} |
- arden | 6 | {bio,cloud} |
- bart-view | 6 | {imaging} |
- clonalorigin | 6 | {bio} |
- elastix | 6 | {imaging} |
- embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {bio,cloud} |
- lamarc | 6 | {bio} |
- libpal-java | 6 | {bio-dev} |
- librg-utils-perl | 6 | {bio} |
+ phast | 7 | {bio} |
+ anfo | 6 | {bio,cloud} |
+ beast-mcmc | 6 | {bio,bio-phylogeny} |
+ bitseq | 6 | {bio} |
+ embassy-domainatrix | 6 | {bio,cloud} |
+ ghmm | 6 | {bio} |
+ libncl | 6 | {bio} |
libsbml | 6 | {bio-dev} |
- mauve-aligner | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
- phyutility | 6 | {bio,cloud} |
- prime-phylo | 6 | {cloud,bio} |
- runcircos-gui | 6 | {bio} |
- saint | 6 | {bio} |
- salmon | 6 | {covid-19,bio} |
- sibsim4 | 6 | {bio,cloud} |
- soapsnp | 6 | {bio} |
- spread-phy | 6 | {bio,bio-phylogeny} |
- staden | 6 | {bio} |
- assemblytics | 5 | {bio} |
- brig | 5 | {bio} |
- canu | 5 | {bio} |
- clonalframeml | 5 | {bio,covid-19} |
- estscan | 5 | {bio} |
- fsm-lite | 5 | {bio} |
- ghmm | 5 | {bio} |
- hinge | 5 | {bio} |
- ipig | 5 | {bio} |
- jmodeltest | 5 | {bio-phylogeny,bio} |
+ stacks | 6 | {bio} |
+ treeview | 6 | {bio-phylogeny,bio} |
+ arden | 5 | {bio,cloud} |
+ bart-view | 5 | {imaging} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ clonalorigin | 5 | {bio} |
+ ecopcr | 5 | {bio} |
+ elastix | 5 | {imaging} |
+ embassy-domalign | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {bio,cloud} |
+ getdata | 5 | {bio} |
+ lamarc | 5 | {bio} |
libminc | 5 | {imaging-dev} |
+ librg-utils-perl | 5 | {bio} |
openslide | 5 | {imaging-dev} |
- paraclu | 5 | {cloud,bio} |
- proalign | 5 | {bio,bio-phylogeny} |
- pscan-chip | 5 | {bio} |
+ perm | 5 | {cloud,bio} |
+ phyutility | 5 | {bio,cloud} |
+ prime-phylo | 5 | {cloud,bio} |
pymia | 5 | {imaging-dev} |
- qcumber | 5 | {bio} |
- rdp-alignment | 5 | {bio} |
- rtax | 5 | {bio,cloud} |
+ quorum | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
salmid | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
samblaster | 5 | {bio,covid-19} |
- seqsero | 5 | {bio} |
- soapaligner | 5 | {bio} |
- surankco | 5 | {bio} |
+ sibsim4 | 5 | {bio,cloud} |
+ soapsnp | 5 | {bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
+ staden | 5 | {bio} |
tracetuner | 5 | {bio} |
tvc | 5 | {bio} |
yaha | 5 | {bio} |
zalign | 5 | {bio,cloud} |
- biomaj3-cli | 4 | {cloud} |
+ assemblytics | 4 | {bio} |
blasr | 4 | {bio,bio-ngs} |
busco | 4 | {bio,covid-19} |
+ clonalframeml | 4 | {bio,covid-19} |
delly | 4 | {bio,covid-19} |
- fastml | 4 | {bio} |
+ estscan | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
gatb-core | 4 | {bio} |
- getdata | 4 | {bio} |
- libdivsufsort | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mhap | 4 | {bio,bio-ngs} |
- microbegps | 4 | {bio} |
+ hinge | 4 | {bio} |
+ ipig | 4 | {bio} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
+ libpal-java | 4 | {bio-dev} |
+ mauve-aligner | 4 | {bio} |
ngs-sdk | 4 | {bio-dev} |
- piler | 4 | {bio} |
- placnet | 4 | {bio} |
- rambo-k | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- sga | 4 | {bio} |
- spaced | 4 | {bio} |
- sprai | 4 | {bio} |
- suitename | 4 | {bio} |
+ paraclu | 4 | {cloud,bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ qcumber | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ rtax | 4 | {bio,cloud} |
+ seqsero | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ surankco | 4 | {bio} |
atropos | 3 | {bio} |
+ biomaj3-cli | 3 | {cloud} |
blimps | 3 | {bio} |
+ brig | 3 | {bio} |
+ canu | 3 | {bio} |
cufflinks | 3 | {cloud,bio} |
- logol | 3 | {bio} |
+ fastml | 3 | {bio} |
+ libdivsufsort | 3 | {bio-dev} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ mhap | 3 | {bio,bio-ngs} |
+ microbegps | 3 | {bio} |
orthanc-postgresql | 3 | {imaging} |
pbdagcon | 3 | {bio} |
+ piler | 3 | {bio} |
+ placnet | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ rambo-k | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
+ sga | 3 | {bio} |
sift | 3 | {bio} |
+ spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
+ suitename | 3 | {bio} |
varscan | 3 | {bio,covid-19} |
bamkit | 2 | {covid-19,bio} |
cat-bat | 2 | {bio,covid-19} |
gifticlib | 2 | {imaging-dev} |
kmerresistance | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
+ logol | 2 | {bio} |
nanosv | 2 | {covid-19,bio} |
nifticlib | 2 | {imaging-dev} |
orthanc-mysql | 2 | {imaging} |
@@ -155,9 +154,9 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ metaphlan2 | 1 | {bio} |
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
- opensurgsim | 1 | {imaging-dev} |
orthanc-gdcm | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
parallel-fastq-dump | 1 | {covid-19} |
@@ -174,7 +173,6 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000
svim | 1 | {bio} |
thesias | 1 | {covid-19,bio} |
tophat-recondition | 1 | {bio,covid-19} |
- varna | 1 | {bio} |
vtk-dicom | 1 | {imaging-dev} |
yanagiba | 1 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
@@ -221,12 +219,13 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
+ opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
plasmidid | 0 | {covid-19,bio} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -234,6 +233,7 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {covid-19,bio} |
+ varna | 0 | {bio} |
vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
orthanc-python | -1 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c236e7d5a66c8375d5741641edd51f6cf2782175
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c236e7d5a66c8375d5741641edd51f6cf2782175
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