Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
c3ef2a0e by Andreas Tille at 2021-03-17T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,174 +1,173 @@
-Last-Update: Wed, 17 Mar 2021 01:42:04 +0000
+Last-Update: Wed, 17 Mar 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 197 | {imaging,covid-19} |
+ dcmtk | 200 | {imaging,covid-19} |
orthanc | 95 | {covid-19,imaging,practice} |
orthanc-wsi | 48 | {covid-19,his,practice,oncology,imaging,laboratory} |
- gdcm | 42 | {imaging-dev} |
- amide | 38 | {imaging} |
- dicom3tools | 37 | {imaging} |
- dicomscope | 37 | {imaging} |
+ gdcm | 40 | {imaging-dev} |
+ amide | 37 | {imaging} |
+ dicom3tools | 35 | {imaging} |
+ dicomscope | 34 | {imaging} |
openslide | 24 | {imaging} |
- htsjdk | 22 | {bio-dev} |
- nifticlib | 22 | {imaging} |
dcm2niix | 21 | {imaging} |
+ htsjdk | 20 | {bio-dev} |
+ nifticlib | 20 | {imaging} |
+ gnumed-server | 19 | {covid-19,practice} |
odin | 19 | {imaging,imaging-dev} |
- gnumed-server | 18 | {covid-19,practice} |
- dicomnifti | 17 | {imaging} |
- gdcm | 17 | {imaging,covid-19} |
- minc-tools | 16 | {imaging} |
+ gdcm | 18 | {imaging,covid-19} |
+ dicomnifti | 16 | {imaging} |
invesalius | 15 | {imaging} |
+ minc-tools | 15 | {imaging} |
gdcm | 14 | {imaging-dev} |
- pixelmed | 14 | {imaging} |
+ pixelmed | 13 | {imaging} |
plastimatch | 13 | {imaging} |
vtk-dicom | 13 | {imaging} |
+ mia | 12 | {imaging} |
adun.app | 11 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
- mia | 11 | {imaging} |
- nifti2dicom | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
nifti2dicom | 9 | {imaging} |
- jebl2 | 8 | {bio-dev} |
melting | 8 | {cloud,bio} |
+ nifti2dicom | 8 | {imaging} |
obitools | 8 | {bio} |
- stacks | 8 | {bio} |
- biojava-live | 7 | {bio-dev} |
- ea-utils | 7 | {bio} |
- jellyfish1 | 7 | {bio} |
- king | 7 | {imaging,typesetting} |
+ jebl2 | 7 | {bio-dev} |
lagan | 7 | {bio} |
+ ngs-sdk | 7 | {bio-dev} |
+ stacks | 7 | {bio} |
bamkit | 6 | {covid-19,bio} |
- bitseq | 6 | {bio} |
+ biojava-live | 6 | {bio-dev} |
dicompyler | 6 | {oncology} |
- embassy-domainatrix | 6 | {cloud,bio} |
+ ea-utils | 6 | {bio} |
ghmm | 6 | {bio} |
+ jellyfish1 | 6 | {bio} |
+ king | 6 | {imaging,typesetting} |
librg-utils-perl | 6 | {bio} |
- ngs-sdk | 6 | {bio-dev} |
- phast | 6 | {bio} |
- rambo-k | 6 | {bio} |
salmid | 6 | {bio} |
- salmon | 6 | {covid-19,bio} |
- treeview | 6 | {bio,bio-phylogeny} |
- anfo | 5 | {bio,cloud} |
- arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
biomaj3-cli | 5 | {cloud} |
- bio-tradis | 5 | {bio-dev,bio} |
+ bitseq | 5 | {bio} |
busco | 5 | {bio,covid-19} |
- clonalorigin | 5 | {bio} |
cufflinks | 5 | {bio,cloud} |
- ecopcr | 5 | {bio} |
- embassy-domalign | 5 | {bio,cloud} |
- lamarc | 5 | {bio} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ estscan | 5 | {bio} |
libminc | 5 | {imaging-dev} |
- libncl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- perm | 5 | {cloud,bio} |
- phyutility | 5 | {bio,cloud} |
+ phast | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- quorum | 5 | {bio} |
- rdp-alignment | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
- saint | 5 | {bio} |
- sibsim4 | 5 | {bio,cloud} |
+ rambo-k | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
tracetuner | 5 | {bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
tvc | 5 | {bio} |
- yaha | 5 | {bio} |
- zalign | 5 | {cloud,bio} |
- assemblytics | 4 | {bio} |
+ anfo | 4 | {bio,cloud} |
+ arden | 4 | {bio,cloud} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
+ bio-tradis | 4 | {bio-dev,bio} |
blasr | 4 | {bio-ngs,bio} |
clonalframeml | 4 | {covid-19,bio} |
- embassy-domsearch | 4 | {bio,cloud} |
- estscan | 4 | {bio} |
- fsm-lite | 4 | {bio} |
- gatb-core | 4 | {bio} |
- getdata | 4 | {bio} |
- ipig | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
- mauve-aligner | 4 | {bio} |
- microbegps | 4 | {bio} |
+ clonalorigin | 4 | {bio} |
+ ecopcr | 4 | {bio} |
+ embassy-domalign | 4 | {bio,cloud} |
+ lamarc | 4 | {bio} |
+ libncl | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
- paraclu | 4 | {cloud,bio} |
- piler | 4 | {bio} |
- prime-phylo | 4 | {bio,cloud} |
- proalign | 4 | {bio,bio-phylogeny} |
- qcumber | 4 | {bio} |
- rtax | 4 | {bio,cloud} |
+ perm | 4 | {cloud,bio} |
+ phyutility | 4 | {bio,cloud} |
+ quorum | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ saint | 4 | {bio} |
samblaster | 4 | {bio,covid-19} |
+ sibsim4 | 4 | {bio,cloud} |
sight | 4 | {imaging} |
- soapaligner | 4 | {bio} |
- soapsnp | 4 | {bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
- staden | 4 | {bio} |
- surankco | 4 | {bio} |
- atropos | 3 | {bio} |
+ yaha | 4 | {bio} |
+ zalign | 4 | {cloud,bio} |
+ assemblytics | 3 | {bio} |
blimps | 3 | {bio} |
- brig | 3 | {bio} |
- canu | 3 | {bio} |
delly | 3 | {covid-19,bio} |
elastix | 3 | {imaging} |
- fastml | 3 | {bio} |
+ embassy-domsearch | 3 | {bio,cloud} |
+ fsm-lite | 3 | {bio} |
+ gatb-core | 3 | {bio} |
+ getdata | 3 | {bio} |
gifticlib | 3 | {imaging-dev} |
hinge | 3 | {bio} |
+ ipig | 3 | {bio} |
+ jmodeltest | 3 | {bio,bio-phylogeny} |
libpal-java | 3 | {bio-dev} |
- librdp-taxonomy-tree-java | 3 | {bio-dev} |
- mhap | 3 | {bio-ngs,bio} |
+ mauve-aligner | 3 | {bio} |
+ microbegps | 3 | {bio} |
+ ngs-sdk | 3 | {bio-dev} |
nifticlib | 3 | {imaging-dev} |
openslide | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
+ paraclu | 3 | {cloud,bio} |
pbdagcon | 3 | {bio} |
- placnet | 3 | {bio} |
- pscan-chip | 3 | {bio} |
- rdp-classifier | 3 | {bio} |
+ piler | 3 | {bio} |
+ prime-phylo | 3 | {bio,cloud} |
+ proalign | 3 | {bio,bio-phylogeny} |
+ qcumber | 3 | {bio} |
+ rtax | 3 | {bio,cloud} |
segemehl | 3 | {bio} |
- sga | 3 | {bio} |
sift | 3 | {bio} |
- spaced | 3 | {bio} |
- sprai | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
+ spread-phy | 3 | {bio,bio-phylogeny} |
+ staden | 3 | {bio} |
suitename | 3 | {bio} |
- varscan | 3 | {bio,covid-19} |
+ surankco | 3 | {bio} |
+ atropos | 2 | {bio} |
+ brig | 2 | {bio} |
+ canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
- kmerresistance | 2 | {bio} |
+ fastml | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
+ librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
- nanosv | 2 | {bio,covid-19} |
- ngs-sdk | 2 | {bio-dev} |
+ mhap | 2 | {bio-ngs,bio} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {tools,practice,data} |
+ placnet | 2 | {bio} |
plasmidid | 2 | {covid-19,bio} |
plasmidseeker | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
+ rdp-classifier | 2 | {bio} |
sambamba | 2 | {bio} |
- skesa | 2 | {bio} |
- spaln | 2 | {covid-19,bio} |
+ seq-gen | 2 | {bio} |
+ sga | 2 | {bio} |
+ spaced | 2 | {bio} |
+ sprai | 2 | {bio} |
trace2dbest | 2 | {bio} |
+ varscan | 2 | {bio,covid-19} |
acedb | 1 | {bio,cloud} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
- emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
+ htscodecs | 1 | {bio-dev,covid-19} |
+ kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
metaphlan2 | 1 | {bio} |
+ nanosv | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
orthanc-gdcm | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
- parallel-fastq-dump | 1 | {covid-19} |
pigx-rnaseq | 1 | {bio,covid-19} |
pilercr | 1 | {bio} |
pique | 1 | {bio} |
pplacer | 1 | {bio,bio-phylogeny,covid-19} |
python-bcbio-gff | 1 | {bio-dev} |
samtools-legacy | 1 | {bio-dev} |
- seq-gen | 1 | {bio} |
shovill | 1 | {covid-19,bio} |
simrisc | 1 | {oncology} |
+ skesa | 1 | {bio} |
skewer | 1 | {bio} |
+ spaln | 1 | {covid-19,bio} |
srf | 1 | {bio-dev} |
svim | 1 | {bio} |
thesias | 1 | {covid-19,bio} |
@@ -182,9 +181,9 @@ Last-Update: Wed, 17 Mar 2021 01:42:04 +0000
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
eegdev | 0 | {imaging-dev} |
+ emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {bio-dev,covid-19} |
intake | 0 | {bio,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -222,10 +221,11 @@ Last-Update: Wed, 17 Mar 2021 01:42:04 +0000
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c3ef2a0e0b26208e1522e7c523f6ae89109e932e
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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c3ef2a0e0b26208e1522e7c523f6ae89109e932e
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