Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
af438629 by Andreas Tille at 2021-03-19T01:42:28+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,8 +1,8 @@
-Last-Update: Wed, 17 Mar 2021 13:42:04 +0000
+Last-Update: Fri, 19 Mar 2021 01:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 200 | {imaging,covid-19} |
+ dcmtk | 201 | {imaging,covid-19} |
orthanc | 95 | {covid-19,imaging,practice} |
orthanc-wsi | 48 | {covid-19,his,practice,oncology,imaging,laboratory} |
gdcm | 40 | {imaging-dev} |
@@ -10,92 +10,78 @@ Last-Update: Wed, 17 Mar 2021 13:42:04 +0000
dicom3tools | 35 | {imaging} |
dicomscope | 34 | {imaging} |
openslide | 24 | {imaging} |
- dcm2niix | 21 | {imaging} |
- htsjdk | 20 | {bio-dev} |
+ dcm2niix | 22 | {imaging} |
+ htsjdk | 21 | {bio-dev} |
nifticlib | 20 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
gnumed-server | 19 | {covid-19,practice} |
odin | 19 | {imaging,imaging-dev} |
- gdcm | 18 | {imaging,covid-19} |
- dicomnifti | 16 | {imaging} |
- invesalius | 15 | {imaging} |
+ dicomnifti | 17 | {imaging} |
+ invesalius | 16 | {imaging} |
+ gdcm | 15 | {imaging-dev} |
minc-tools | 15 | {imaging} |
- gdcm | 14 | {imaging-dev} |
- pixelmed | 13 | {imaging} |
+ pixelmed | 14 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
plastimatch | 13 | {imaging} |
- vtk-dicom | 13 | {imaging} |
+ adun.app | 12 | {bio} |
+ insighttoolkit4 | 12 | {imaging-dev} |
mia | 12 | {imaging} |
- adun.app | 11 | {bio} |
- insighttoolkit4 | 11 | {imaging-dev} |
orthanc-webviewer | 10 | {imaging} |
ngs-sdk | 9 | {bio-dev} |
nifti2dicom | 9 | {imaging} |
- melting | 8 | {cloud,bio} |
nifti2dicom | 8 | {imaging} |
obitools | 8 | {bio} |
- jebl2 | 7 | {bio-dev} |
- lagan | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
stacks | 7 | {bio} |
bamkit | 6 | {covid-19,bio} |
- biojava-live | 6 | {bio-dev} |
dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
- ghmm | 6 | {bio} |
- jellyfish1 | 6 | {bio} |
+ jebl2 | 6 | {bio-dev} |
king | 6 | {imaging,typesetting} |
- librg-utils-perl | 6 | {bio} |
+ lagan | 6 | {bio} |
+ melting | 6 | {cloud,bio} |
salmid | 6 | {bio} |
bart-view | 5 | {imaging} |
- biomaj3-cli | 5 | {cloud} |
- bitseq | 5 | {bio} |
+ biojava-live | 5 | {bio-dev} |
busco | 5 | {bio,covid-19} |
cufflinks | 5 | {bio,cloud} |
- embassy-domainatrix | 5 | {cloud,bio} |
- estscan | 5 | {bio} |
+ ghmm | 5 | {bio} |
+ jellyfish1 | 5 | {bio} |
libminc | 5 | {imaging-dev} |
+ librg-utils-perl | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- phast | 5 | {bio} |
pymia | 5 | {imaging-dev} |
rambo-k | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
- tracetuner | 5 | {bio} |
treeview | 5 | {bio,bio-phylogeny} |
- tvc | 5 | {bio} |
- anfo | 4 | {bio,cloud} |
- arden | 4 | {bio,cloud} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
+ biomaj3-cli | 4 | {cloud} |
bio-tradis | 4 | {bio-dev,bio} |
- blasr | 4 | {bio-ngs,bio} |
- clonalframeml | 4 | {covid-19,bio} |
+ bitseq | 4 | {bio} |
clonalorigin | 4 | {bio} |
ecopcr | 4 | {bio} |
- embassy-domalign | 4 | {bio,cloud} |
- lamarc | 4 | {bio} |
+ elastix | 4 | {imaging} |
+ embassy-domainatrix | 4 | {cloud,bio} |
+ estscan | 4 | {bio} |
libncl | 4 | {bio} |
orthanc-dicomweb | 4 | {imaging,covid-19} |
- perm | 4 | {cloud,bio} |
- phyutility | 4 | {bio,cloud} |
- quorum | 4 | {bio} |
+ phast | 4 | {bio} |
rdp-alignment | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
- samblaster | 4 | {bio,covid-19} |
- sibsim4 | 4 | {bio,cloud} |
+ salmon | 4 | {covid-19,bio} |
sight | 4 | {imaging} |
- yaha | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
+ tracetuner | 4 | {bio} |
+ tvc | 4 | {bio} |
+ anfo | 3 | {bio,cloud} |
+ arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
+ blasr | 3 | {bio-ngs,bio} |
blimps | 3 | {bio} |
- delly | 3 | {covid-19,bio} |
- elastix | 3 | {imaging} |
- embassy-domsearch | 3 | {bio,cloud} |
+ clonalframeml | 3 | {covid-19,bio} |
+ embassy-domalign | 3 | {bio,cloud} |
fsm-lite | 3 | {bio} |
- gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
gifticlib | 3 | {imaging-dev} |
- hinge | 3 | {bio} |
- ipig | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
+ lamarc | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
microbegps | 3 | {bio} |
@@ -103,45 +89,58 @@ Last-Update: Wed, 17 Mar 2021 13:42:04 +0000
nifticlib | 3 | {imaging-dev} |
openslide | 3 | {imaging-dev} |
orthanc-postgresql | 3 | {imaging} |
- paraclu | 3 | {cloud,bio} |
pbdagcon | 3 | {bio} |
+ perm | 3 | {cloud,bio} |
+ phyutility | 3 | {bio,cloud} |
piler | 3 | {bio} |
- prime-phylo | 3 | {bio,cloud} |
- proalign | 3 | {bio,bio-phylogeny} |
qcumber | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
- segemehl | 3 | {bio} |
+ quorum | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
+ saint | 3 | {bio} |
+ samblaster | 3 | {bio,covid-19} |
+ sibsim4 | 3 | {bio,cloud} |
sift | 3 | {bio} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
spread-phy | 3 | {bio,bio-phylogeny} |
- staden | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
+ yaha | 3 | {bio} |
+ zalign | 3 | {cloud,bio} |
atropos | 2 | {bio} |
brig | 2 | {bio} |
canu | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
+ embassy-domsearch | 2 | {bio,cloud} |
fastml | 2 | {bio} |
+ gatb-core | 2 | {bio} |
+ hinge | 2 | {bio} |
+ ipig | 2 | {bio} |
libdivsufsort | 2 | {bio-dev} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
logol | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
orthanc-mysql | 2 | {imaging} |
oscar | 2 | {tools,practice,data} |
+ paraclu | 2 | {cloud,bio} |
placnet | 2 | {bio} |
plasmidid | 2 | {covid-19,bio} |
plasmidseeker | 2 | {bio} |
+ prime-phylo | 2 | {bio,cloud} |
+ proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
rdp-classifier | 2 | {bio} |
+ rtax | 2 | {bio,cloud} |
sambamba | 2 | {bio} |
+ segemehl | 2 | {bio} |
seq-gen | 2 | {bio} |
sga | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
+ staden | 2 | {bio} |
trace2dbest | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
- acedb | 1 | {bio,cloud} |
bbmap | 1 | {covid-19,bio} |
bustools | 1 | {covid-19,bio} |
dextractor | 1 | {bio,covid-19} |
@@ -174,6 +173,7 @@ Last-Update: Wed, 17 Mar 2021 13:42:04 +0000
tophat-recondition | 1 | {covid-19,bio} |
varna | 1 | {bio} |
yanagiba | 1 | {covid-19,bio} |
+ acedb | 0 | {bio,cloud} |
bambamc | 0 | {bio-dev} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
@@ -216,7 +216,6 @@ Last-Update: Wed, 17 Mar 2021 13:42:04 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
- mssstest | 0 | {tools} |
nifticlib | 0 | {imaging-dev} |
opencfu | 0 | {laboratory} |
opensurgsim | 0 | {imaging-dev} |
@@ -235,6 +234,7 @@ Last-Update: Wed, 17 Mar 2021 13:42:04 +0000
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
+ mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
(266 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/af438629d4efab49b631e1f90e7a2b91976fafca
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/af438629d4efab49b631e1f90e7a2b91976fafca
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