[med-svn] [Git][med-team/bcbio][upstream] New upstream version 1.2.8

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / bcbio


Commits:
6d1de787 by Steffen Moeller at 2021-05-07T20:29:57+02:00
New upstream version 1.2.8
- - - - -


30 changed files:

- HISTORY.md
- LICENSE.txt
- bcbio/chipseq/atac.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/ngsalign/bismark.py
- bcbio/ngsalign/bwa.py
- bcbio/pipeline/qcsummary.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/qc/contamination.py
- bcbio/qc/multiqc.py
- bcbio/qc/qualimap.py
- bcbio/rnaseq/gtf.py
- bcbio/structural/purecn.py
- bcbio/structural/regions.py
- bcbio/structural/titancna.py
- bcbio/upload/__init__.py
- bcbio/variation/gatkjoint.py
- bcbio/variation/mutect2.py
- bcbio/wgbsseq/align.py
- bcbio/wgbsseq/deduplication.py
- bcbio/wgbsseq/kits.py
- bcbio/workflow/template.py
- config/examples/cancer-dream-syn3.yaml
- + config/templates/purecn_pon.yaml
- config/templates/somatic-duplex-umi.yaml
- docs/conf.py
- docs/contents/atac.md
- docs/contents/citations.md


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/commit/6d1de7876abe66b9c405a04d2d83aa2ac9197621

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