[med-svn] [Git][med-team/bcbio][master] 5 commits: New upstream version 1.2.8

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
6d1de787 by Steffen Moeller at 2021-05-07T20:29:57+02:00
New upstream version 1.2.8
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c2d9ba19 by Steffen Moeller at 2021-05-07T20:29:57+02:00
routine-update: New upstream version

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5e993c9a by Steffen Moeller at 2021-05-07T20:30:42+02:00
Update upstream source from tag 'upstream/1.2.8'

Update to upstream version '1.2.8'
with Debian dir 6a59ce8b07eb9a17d3fb1fc1a8dfe3cf437b3159
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c3259f06 by Steffen Moeller at 2021-05-07T20:30:42+02:00
routine-update: Standards-Version: 4.5.1

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cd8feac3 by Steffen Moeller at 2021-05-07T20:42:27+02:00
routine-update: Restructuring of d/control

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30 changed files:

- HISTORY.md
- LICENSE.txt
- bcbio/chipseq/atac.py
- bcbio/chipseq/macs2.py
- bcbio/chipseq/peaks.py
- bcbio/ngsalign/bismark.py
- bcbio/ngsalign/bwa.py
- bcbio/pipeline/qcsummary.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/qc/contamination.py
- bcbio/qc/multiqc.py
- bcbio/qc/qualimap.py
- bcbio/rnaseq/gtf.py
- bcbio/structural/purecn.py
- bcbio/structural/regions.py
- bcbio/structural/titancna.py
- bcbio/upload/__init__.py
- bcbio/variation/gatkjoint.py
- bcbio/variation/mutect2.py
- bcbio/wgbsseq/align.py
- bcbio/wgbsseq/deduplication.py
- bcbio/wgbsseq/kits.py
- bcbio/workflow/template.py
- config/examples/cancer-dream-syn3.yaml
- + config/templates/purecn_pon.yaml
- config/templates/somatic-duplex-umi.yaml
- debian/changelog
- debian/control
- docs/conf.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/68261fcdb35b8f5d078023944114bc5b465cb884...cd8feac301800694e286f39f4104597b70d1d857

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/68261fcdb35b8f5d078023944114bc5b465cb884...cd8feac301800694e286f39f4104597b70d1d857
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